Click here to switch to the map view.

The map label for this gene is 119943957

Identifier: 119943957

GI number: 119943957

Start: 219957

End: 220394

Strand: Reverse

Name: 119943957

Synonym: Ping_0170

Alternate gene names: NA

Gene position: 220394-219957 (Counterclockwise)

Preceding gene: 119943958

Following gene: 119943956

Centisome position: 4.83

GC content: 46.8

Gene sequence:

>438_bases
ATGGAGTTTACCGTGAACCTTATTAAACGTATTACCCTGCTTATGGGCTTAACAATAAGCCTCTTCAGCACTGCAGGCTT
TGCACAAGATCTTTCTGAAGCAGCCATTGCTGAACGTATTGCACCGGTAGGTAGCGTTTATTTAGATGGTGAAATAATGA
CCGCCCAGCAAAGTCCAGTTTCAGCTGAACCCGCAGGCCCAAGATCAGGTGAGAAAATTTATAACACTTACTGCATGGCC
TGCCATGCGACAGGTGTGCTTGGCTCACCGAAAAAAGGCGATGCAGCCGCATGGGCACCGCGTATAGCACAGGGTGCTGA
AATAATGCTAAAACATGCGATAGAAGGCTATAATTCTATGCCTGCAAAAGGCACATGTGGTGACTGTAGCGAACAGGAAA
TAGCATCAACTATTGCGTTCTTAACCGCTGGCCTTTAG

Upstream 100 bases:

>100_bases
AACTGGAAGCGATAATCCTAATAAAGGCGTTGGTAGTTATAATCAACCTCGTTATAATTGGCACTTTTATAATATCTACA
AATCCTTACACAACAGAAAA

Downstream 100 bases:

>100_bases
TCTGTAAGATGAATTATCTAATTTAGCCACCTGTAAGGTGGCTTTTTTATAGCCAATATTTATAGCACCTGGTTATTGTT
ATGCACCTCCACATTAAAAA

Product: cytochrome c, class I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MEFTVNLIKRITLLMGLTISLFSTAGFAQDLSEAAIAERIAPVGSVYLDGEIMTAQQSPVSAEPAGPRSGEKIYNTYCMA
CHATGVLGSPKKGDAAAWAPRIAQGAEIMLKHAIEGYNSMPAKGTCGDCSEQEIASTIAFLTAGL

Sequences:

>Translated_145_residues
MEFTVNLIKRITLLMGLTISLFSTAGFAQDLSEAAIAERIAPVGSVYLDGEIMTAQQSPVSAEPAGPRSGEKIYNTYCMA
CHATGVLGSPKKGDAAAWAPRIAQGAEIMLKHAIEGYNSMPAKGTCGDCSEQEIASTIAFLTAGL
>Mature_145_residues
MEFTVNLIKRITLLMGLTISLFSTAGFAQDLSEAAIAERIAPVGSVYLDGEIMTAQQSPVSAEPAGPRSGEKIYNTYCMA
CHATGVLGSPKKGDAAAWAPRIAQGAEIMLKHAIEGYNSMPAKGTCGDCSEQEIASTIAFLTAGL

Specific function: It is unreactive with cytochrome c reductase or oxidase [H]

COG id: COG3245

COG function: function code C; Cytochrome c5

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR002323 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15158; Mature: 15158

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFTVNLIKRITLLMGLTISLFSTAGFAQDLSEAAIAERIAPVGSVYLDGEIMTAQQSPV
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCC
SAEPAGPRSGEKIYNTYCMACHATGVLGSPKKGDAAAWAPRIAQGAEIMLKHAIEGYNSM
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PAKGTCGDCSEQEIASTIAFLTAGL
CCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEFTVNLIKRITLLMGLTISLFSTAGFAQDLSEAAIAERIAPVGSVYLDGEIMTAQQSPV
CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCCC
SAEPAGPRSGEKIYNTYCMACHATGVLGSPKKGDAAAWAPRIAQGAEIMLKHAIEGYNSM
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PAKGTCGDCSEQEIASTIAFLTAGL
CCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2993632 [H]