| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is mrcA [H]
Identifier: 119943944
GI number: 119943944
Start: 206186
End: 208741
Strand: Reverse
Name: mrcA [H]
Synonym: Ping_0157
Alternate gene names: 119943944
Gene position: 208741-206186 (Counterclockwise)
Preceding gene: 119943956
Following gene: 119943942
Centisome position: 4.58
GC content: 42.68
Gene sequence:
>2556_bases ATGATGCAATGGATTAAACGTTTGGTATTATTTTCAATTTTCACAGGCTTAATGGGTATTGGAGCCATAGTCGCAATTTA TTATCACGTAAAATCTGATTTACCTGATGTTGCCACTATTACCGAGATTCAGTTACAGGTGCCAATGAAAGTTTACAGTA TTGATGGTGAACTACTTTCTCAGTTTGGAGAAAAACGCCGTATTCCTCTCACCAAAGAGGATATTCCAGAGATGCTTACT AATGCTTTTATAGCGATAGAAGACAGTCGCTTTTACCAACATTTTGGGATCGATCCAATTGGTATTATCCGTGCAGCCAC TGTATGGGCTTCAACGGGTTCAGCAACGCAAGGTGCCAGCACTATTACTCAGCAGGTCGCACGTAACTTCTTTTTAACCC GTGACAAAACATTCATCCGTAAAATTAAAGAGGTTTTTATTGCCGTTCAGCTCGAACAAATATTAACTAAAGATGAAATT ATGATGCTCTATTTGAATAAAATAGCTTTGGGACAACGAGCATATGGTATTGGCGCAGCTGCTCAGGTTTATTATGGCAA AAATGTCTCAGAATTAACTTTGGCAGAAATGGCCCTTCTGGCGGGCTTGCCAAAAGCACCCTCGAATTTAAATCCGATCG CATCGCCTAAAAATGCAGAGATGCGTCGTAATGTGGTTTTATACCGTATGTTATCCGAAAACTACATTACTCAAGATCAA TACGAAACTGCAAAAGCAAGCCCAATTACAGCGACATACCATGGCGCTGAGATAACACTATCGGCCCATTATGTTGCAGA AATAGCGCGTAATAAGTTAATTGAACTATATGGATCCGAACGCAGTTACAACGAAGGTTTTAATGTTTATACCACGATCA ATAAAATTGACCAGCAAGCTGCTAACAAAGCAACACTTAATAACCTCCATGATTATGATAAACGTCATGGTTACCGCGGT GCGAGTAAAGTGTTATGGCAAGCGCCGGCAGAAAATTGGAGTACCAAGGCGATAGTTTCAAGTTTAAACCAAACACCTGA CTCTGGCGATCTGCAGCCTGCAGTAGTTGTCGAGGTTAACAAACAGGCTATTAAAGTGATCACTAAAAATAGCCAGGGAG CCTTGCAAGAGATCGATTGGGATGGTTTAAAATGGGCCAGACCCTTCATCACAAATTCCAGACAAGGGACAGAGCCTAAA AAAGCATCTGACATTGTTGCTGTTGGCCAACAAATATGGGTTCGTGAAATTGCACAAAAATTAGAATTATCTCAATATCC CGCGGTCAGCGCGGCATTTGTTTCTCTTAATCCACAGGATGGGGCTATTACTTCTATGGTTGGTGGTTTTAGTTTTGAAC AGAGTAAATTTAATCGTGCGACGCAAGCGCAGCGTCAAGTGGGTTCCAATATCAAGCCATTTATCTACTCTGCAGCACTG GATAGTGGTTATACGTTAGCCACTTTGGTTAATGATGCCCCCATTAATGAATGGGCGGGAAGTACAGCCTGGAGACCAAA AAACTCGCCGGAGGTTTATGCCGGCCCGATTCGCTTGCGTCAAGCTCTCGGACAATCTAAAAATGTCGTCTCCGTTCGCC TGGTACAGGATCTCGGATTAACAAAAGTGACCAACCAGCTGGAAAAATATGGTTTTGAGAGAGAGAATCTGCCCCAAAAT AATACCATAGCGTTAGGCTCTGCCTCTATTTCGCCATTAAATCTCGCAACAGGTTATGCCATTATCGCCAACGGAGGCTT TAAAATAGAGCCCTATATTATTGAGCGTATTGAAGATGCTTATGGAAGCGTTATTTATCAGGCTAATCCTAAAATTGTTT GCTCTTATTGTGCTGAGCTTTATGCGCAACAGGGAGATAACCAGCAATTTATCGCAACACAAACAGAGTTAGACAAAAGC GCTAATATTTGCCCTATTTCACCCGTAAGTGCAGATCAAATTGCATCGGCAGTCATTAGCGCTGAAAATGCATTTTTAAC CCGTGAATTATTAAAAACAGCAATCTGGGGAGGAGGCAGCTGGCAACATAATAGCGGTTGGAATGGTACAGGCTGGCGTG CTGGACGGGCTTTGGAGCGCCATGACATGGGTGGAAAAACAGGCACCACAAACGGATCGAAAGATGCCTGGTTTTCTGGT TTTGCAGGTAATACTGTAGCCACATCATGGGTTGGATTTGATGATTTCAATCTTGATTTAGGCAGAACCAGCTACAACAA TAATCTTGATAAAGATCAAGCCACAGGGGGTGAGTATGGCGCAAGGACAGCTCAACCTGCCTGGATAGAATTTATGCAGG AAACGGCTTTATCAAACCCACGGGTAACAGTAGACACTCCCTCCACGATTTCGACCGTACGTATCGACCGAAAATCGGGA CTGTTAACTTACGAGACAGATCACACTACATTGTTTGAATATTTCAGAGCAGATTCTGTCCCCACTGAATATATGAATCG AACGGCTGTCTTCAAAACAGAGGGTAATCAGGATATACCCTACAACGCCCCTACTTCTGTTGATGAACTGTTCTAG
Upstream 100 bases:
>100_bases TCCCTCTTTAACTACACAAATATCACTATATACTGATATCTATTGCGAACGAGTAACAATTTAAATCAATTAATGGCAAC AAATTCTAAGGTACGTATAA
Downstream 100 bases:
>100_bases CACAGATTCCAGTACTGACTTAAAGATGCAGAAATCAGCATCTTTAAGTCATTTCAGTATATACCCATGATACTTCAAGA TGCAAAGTCAGCAAGGAAAA
Product: penicillin-binding protein, 1A family protein
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 851; Mature: 851
Protein sequence:
>851_residues MMQWIKRLVLFSIFTGLMGIGAIVAIYYHVKSDLPDVATITEIQLQVPMKVYSIDGELLSQFGEKRRIPLTKEDIPEMLT NAFIAIEDSRFYQHFGIDPIGIIRAATVWASTGSATQGASTITQQVARNFFLTRDKTFIRKIKEVFIAVQLEQILTKDEI MMLYLNKIALGQRAYGIGAAAQVYYGKNVSELTLAEMALLAGLPKAPSNLNPIASPKNAEMRRNVVLYRMLSENYITQDQ YETAKASPITATYHGAEITLSAHYVAEIARNKLIELYGSERSYNEGFNVYTTINKIDQQAANKATLNNLHDYDKRHGYRG ASKVLWQAPAENWSTKAIVSSLNQTPDSGDLQPAVVVEVNKQAIKVITKNSQGALQEIDWDGLKWARPFITNSRQGTEPK KASDIVAVGQQIWVREIAQKLELSQYPAVSAAFVSLNPQDGAITSMVGGFSFEQSKFNRATQAQRQVGSNIKPFIYSAAL DSGYTLATLVNDAPINEWAGSTAWRPKNSPEVYAGPIRLRQALGQSKNVVSVRLVQDLGLTKVTNQLEKYGFERENLPQN NTIALGSASISPLNLATGYAIIANGGFKIEPYIIERIEDAYGSVIYQANPKIVCSYCAELYAQQGDNQQFIATQTELDKS ANICPISPVSADQIASAVISAENAFLTRELLKTAIWGGGSWQHNSGWNGTGWRAGRALERHDMGGKTGTTNGSKDAWFSG FAGNTVATSWVGFDDFNLDLGRTSYNNNLDKDQATGGEYGARTAQPAWIEFMQETALSNPRVTVDTPSTISTVRIDRKSG LLTYETDHTTLFEYFRADSVPTEYMNRTAVFKTEGNQDIPYNAPTSVDELF
Sequences:
>Translated_851_residues MMQWIKRLVLFSIFTGLMGIGAIVAIYYHVKSDLPDVATITEIQLQVPMKVYSIDGELLSQFGEKRRIPLTKEDIPEMLT NAFIAIEDSRFYQHFGIDPIGIIRAATVWASTGSATQGASTITQQVARNFFLTRDKTFIRKIKEVFIAVQLEQILTKDEI MMLYLNKIALGQRAYGIGAAAQVYYGKNVSELTLAEMALLAGLPKAPSNLNPIASPKNAEMRRNVVLYRMLSENYITQDQ YETAKASPITATYHGAEITLSAHYVAEIARNKLIELYGSERSYNEGFNVYTTINKIDQQAANKATLNNLHDYDKRHGYRG ASKVLWQAPAENWSTKAIVSSLNQTPDSGDLQPAVVVEVNKQAIKVITKNSQGALQEIDWDGLKWARPFITNSRQGTEPK KASDIVAVGQQIWVREIAQKLELSQYPAVSAAFVSLNPQDGAITSMVGGFSFEQSKFNRATQAQRQVGSNIKPFIYSAAL DSGYTLATLVNDAPINEWAGSTAWRPKNSPEVYAGPIRLRQALGQSKNVVSVRLVQDLGLTKVTNQLEKYGFERENLPQN NTIALGSASISPLNLATGYAIIANGGFKIEPYIIERIEDAYGSVIYQANPKIVCSYCAELYAQQGDNQQFIATQTELDKS ANICPISPVSADQIASAVISAENAFLTRELLKTAIWGGGSWQHNSGWNGTGWRAGRALERHDMGGKTGTTNGSKDAWFSG FAGNTVATSWVGFDDFNLDLGRTSYNNNLDKDQATGGEYGARTAQPAWIEFMQETALSNPRVTVDTPSTISTVRIDRKSG LLTYETDHTTLFEYFRADSVPTEYMNRTAVFKTEGNQDIPYNAPTSVDELF >Mature_851_residues MMQWIKRLVLFSIFTGLMGIGAIVAIYYHVKSDLPDVATITEIQLQVPMKVYSIDGELLSQFGEKRRIPLTKEDIPEMLT NAFIAIEDSRFYQHFGIDPIGIIRAATVWASTGSATQGASTITQQVARNFFLTRDKTFIRKIKEVFIAVQLEQILTKDEI MMLYLNKIALGQRAYGIGAAAQVYYGKNVSELTLAEMALLAGLPKAPSNLNPIASPKNAEMRRNVVLYRMLSENYITQDQ YETAKASPITATYHGAEITLSAHYVAEIARNKLIELYGSERSYNEGFNVYTTINKIDQQAANKATLNNLHDYDKRHGYRG ASKVLWQAPAENWSTKAIVSSLNQTPDSGDLQPAVVVEVNKQAIKVITKNSQGALQEIDWDGLKWARPFITNSRQGTEPK KASDIVAVGQQIWVREIAQKLELSQYPAVSAAFVSLNPQDGAITSMVGGFSFEQSKFNRATQAQRQVGSNIKPFIYSAAL DSGYTLATLVNDAPINEWAGSTAWRPKNSPEVYAGPIRLRQALGQSKNVVSVRLVQDLGLTKVTNQLEKYGFERENLPQN NTIALGSASISPLNLATGYAIIANGGFKIEPYIIERIEDAYGSVIYQANPKIVCSYCAELYAQQGDNQQFIATQTELDKS ANICPISPVSADQIASAVISAENAFLTRELLKTAIWGGGSWQHNSGWNGTGWRAGRALERHDMGGKTGTTNGSKDAWFSG FAGNTVATSWVGFDDFNLDLGRTSYNNNLDKDQATGGEYGARTAQPAWIEFMQETALSNPRVTVDTPSTISTVRIDRKSG LLTYETDHTTLFEYFRADSVPTEYMNRTAVFKTEGNQDIPYNAPTSVDELF
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=843, Percent_Identity=47.8054567022539, Blast_Score=816, Evalue=0.0, Organism=Escherichia coli, GI1786343, Length=287, Percent_Identity=30.3135888501742, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1788867, Length=202, Percent_Identity=39.6039603960396, Blast_Score=135, Evalue=1e-32, Organism=Escherichia coli, GI1789601, Length=177, Percent_Identity=31.638418079096, Blast_Score=89, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 93977; Mature: 93977
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQWIKRLVLFSIFTGLMGIGAIVAIYYHVKSDLPDVATITEIQLQVPMKVYSIDGELLS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEECCHHHHH QFGEKRRIPLTKEDIPEMLTNAFIAIEDSRFYQHFGIDPIGIIRAATVWASTGSATQGAS HHHHCCCCCCCHHHHHHHHHCCEEEEECCHHHHHCCCCHHHHHHHHHHEECCCCCCCCHH TITQQVARNFFLTRDKTFIRKIKEVFIAVQLEQILTKDEIMMLYLNKIALGQRAYGIGAA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHCCCCCE AQVYYGKNVSELTLAEMALLAGLPKAPSNLNPIASPKNAEMRRNVVLYRMLSENYITQDQ EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEHHCCCCCCCH YETAKASPITATYHGAEITLSAHYVAEIARNKLIELYGSERSYNEGFNVYTTINKIDQQA HHHCCCCCCEEEECCCEEEEHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEHHHHHHHH ANKATLNNLHDYDKRHGYRGASKVLWQAPAENWSTKAIVSSLNQTPDSGDLQPAVVVEVN HHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEC KQAIKVITKNSQGALQEIDWDGLKWARPFITNSRQGTEPKKASDIVAVGQQIWVREIAQK CCEEEEEECCCCCCHHHCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LELSQYPAVSAAFVSLNPQDGAITSMVGGFSFEQSKFNRATQAQRQVGSNIKPFIYSAAL HHHHCCCCCEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHH DSGYTLATLVNDAPINEWAGSTAWRPKNSPEVYAGPIRLRQALGQSKNVVSVRLVQDLGL CCCCEEEEEECCCCCHHHCCCCCCCCCCCCCEEECHHHHHHHHCCCCCEEEEEEHHHCCH TKVTNQLEKYGFERENLPQNNTIALGSASISPLNLATGYAIIANGGFKIEPYIIERIEDA HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCEEEEECCCEEECHHHHHHHHHH YGSVIYQANPKIVCSYCAELYAQQGDNQQFIATQTELDKSANICPISPVSADQIASAVIS HCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHH AENAFLTRELLKTAIWGGGSWQHNSGWNGTGWRAGRALERHDMGGKTGTTNGSKDAWFSG HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCCCC FAGNTVATSWVGFDDFNLDLGRTSYNNNLDKDQATGGEYGARTAQPAWIEFMQETALSNP CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCC RVTVDTPSTISTVRIDRKSGLLTYETDHTTLFEYFRADSVPTEYMNRTAVFKTEGNQDIP EEEEECCCCEEEEEEECCCCEEEEECCCHHHHHHHHCCCCCHHHHCCEEEEEECCCCCCC YNAPTSVDELF CCCCCCHHHCC >Mature Secondary Structure MMQWIKRLVLFSIFTGLMGIGAIVAIYYHVKSDLPDVATITEIQLQVPMKVYSIDGELLS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCEEEEECCHHHHH QFGEKRRIPLTKEDIPEMLTNAFIAIEDSRFYQHFGIDPIGIIRAATVWASTGSATQGAS HHHHCCCCCCCHHHHHHHHHCCEEEEECCHHHHHCCCCHHHHHHHHHHEECCCCCCCCHH TITQQVARNFFLTRDKTFIRKIKEVFIAVQLEQILTKDEIMMLYLNKIALGQRAYGIGAA HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHCCCCCE AQVYYGKNVSELTLAEMALLAGLPKAPSNLNPIASPKNAEMRRNVVLYRMLSENYITQDQ EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHEEEHHCCCCCCCH YETAKASPITATYHGAEITLSAHYVAEIARNKLIELYGSERSYNEGFNVYTTINKIDQQA HHHCCCCCCEEEECCCEEEEHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEHHHHHHHH ANKATLNNLHDYDKRHGYRGASKVLWQAPAENWSTKAIVSSLNQTPDSGDLQPAVVVEVN HHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEC KQAIKVITKNSQGALQEIDWDGLKWARPFITNSRQGTEPKKASDIVAVGQQIWVREIAQK CCEEEEEECCCCCCHHHCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LELSQYPAVSAAFVSLNPQDGAITSMVGGFSFEQSKFNRATQAQRQVGSNIKPFIYSAAL HHHHCCCCCEEEEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHH DSGYTLATLVNDAPINEWAGSTAWRPKNSPEVYAGPIRLRQALGQSKNVVSVRLVQDLGL CCCCEEEEEECCCCCHHHCCCCCCCCCCCCCEEECHHHHHHHHCCCCCEEEEEEHHHCCH TKVTNQLEKYGFERENLPQNNTIALGSASISPLNLATGYAIIANGGFKIEPYIIERIEDA HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEECCCEEEEECCCEEECHHHHHHHHHH YGSVIYQANPKIVCSYCAELYAQQGDNQQFIATQTELDKSANICPISPVSADQIASAVIS HCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHH AENAFLTRELLKTAIWGGGSWQHNSGWNGTGWRAGRALERHDMGGKTGTTNGSKDAWFSG HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCHHHHCCCCCCCCCCCCCCCCCCC FAGNTVATSWVGFDDFNLDLGRTSYNNNLDKDQATGGEYGARTAQPAWIEFMQETALSNP CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCC RVTVDTPSTISTVRIDRKSGLLTYETDHTTLFEYFRADSVPTEYMNRTAVFKTEGNQDIP EEEEECCCCEEEEEEECCCCEEEEECCCHHHHHHHHCCCCCHHHHCCEEEEEECCCCCCC YNAPTSVDELF CCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]