Definition Psychromonas ingrahamii 37, complete genome.
Accession NC_008709
Length 4,559,598

Click here to switch to the map view.

The map label for this gene is bgxA [H]

Identifier: 119943929

GI number: 119943929

Start: 182140

End: 184401

Strand: Direct

Name: bgxA [H]

Synonym: Ping_0139

Alternate gene names: 119943929

Gene position: 182140-184401 (Clockwise)

Preceding gene: 119943928

Following gene: 119943931

Centisome position: 3.99

GC content: 51.81

Gene sequence:

>2262_bases
ATGAAGAATAAAATGAACAAAGTCTTCTCTGTTACCCCGATCGCTCTGGCAGTCTTTCTCGCCGGTTGCAACAACGATGT
AATAGAGACCACGCAGGTCGTTAAGGCTGAGTTTGCACAGACCAAACTCGATGCGCGCGGAGTTGATCTTATCAGCACCG
ACGGTTACCAGTTTAAAGATCTTAATAAAAACGGAATATTGAATGTTTATGAAGATTGGCGTAAGACAGTAGATGAGCGG
GTTGGCGATCTGGTTTCTCAGATGACGCTCGAAGAAAAAGTCGGCATGATGCTGATTGATACGATGAACGCTGCGGCTTA
TGGTTCGGTGAACGGCACTCACGTTGATTATATCGAGCAGCAGAAGATGACCCGCTTTATCTTCCGCAACGCGATCCTGC
CTCAGAACGAGGTTGACGCTCTTCCTATTGGGGAGCGTGCGCCAGGAGGGGATATTGTCACAGGTCGCGCCAGCGCATCG
ATCAGCCCCTCGGAAGCCGCTCAATATATGAATATCGTGCAGGAGTTAAGCGAGTCTACCCGTCTGGGTATCCCGGCGCT
GTTTAAATCCAATGCGCGTAACCATAACGATCCTAATGCCAGAGCCGGCATTAACGTTTCTGCCGGTGCCTTCTCCGAAT
GGCCGAAAGAGGCGGGTCTGGCTGCTACCCGAGATATGGAGCTGATCGGCGAGTTCGCCCAGATTATGCGCACCGAGTGG
AATGCAATCGGTCTGCGCGGCATGTACGGTTATATGGCAGATCTCTCCACCGAGCCGCGCTGGTACCGGGTACATGAAAC
CTTTACTGAAGATTCTGATCTGGCTTCTGAAATTATGACGGTGCTGGTCAGTAACCTGCAGGGTAAGGAGGTGACCCCTA
GCAGTGTCGTCCTGACCATGAAGCACTTTCCTGGCGGCGGTCCGCAGTTCCTAGGGTTAGATCCGCACTACATGGCGGGT
CAGCATCAGAGCTATCCGACTGGCAATTTTGACTACCATGTTAAGCCCTTTAAAGCGGCGATCGATGCCGGTGTTGCGGC
GCTGATGCCTTATTACGGTATTGTCGGTGGCGGCGAGTGGTCACTGAGTAATCCGGACGAGACTAACTTGGATGTGGGTG
GCATACAACTTGCCGAGGTTGTCTCTGATCGTGTCCAAGATACAGTACGTGTCCCGTATAACGGATACAGCACGACCGAG
GGGACGCCTGCCGGTAATGTCGGAATAGCCTTCTCCAAAGGAATTTTGTCGGATCTGCTGCGCAGGGATCTTGGCTTTAG
CGGTGTGATTAACTCCGATACCGGTATTATCGGAGAGACCAACAACGGTCTGTCTGATACTGACACGATTCAAAACAACC
GCGCCTGGGGTCTGCAGGACAAGGACAAGTCTGAACAGCTGGTTGTGGCTATCGAAGCGGGCACCGATGTGTTCTCCGGT
TTCCACAGTAATTCTGAGGTTCGTACTCTGGTCGAGCAGGGCCTGGTTTCTGAAGCGCGTATTGACGAGTCGGTTAAACG
TTTGCTGAAAGTGCAGTTTGAGTTGGGGCTGTTTGAAAATCCTTATGTGGATCCTGTACGTGCTAATGCCATTGTCGGTA
ACGCATCATTTCAGGAAAAAGCTCTGCTGGCACAACGTAAAGCCGTTGTACTGCTTGACAATAAAGTCGCGGAAGGTGCA
GTAGAAGCAATTCTGCCGCTTCCTGCAGCCGCTAATCTCTATACTATGGGAATGGACAGCGGGGTCGTTGAAGGTTACGG
CTATACTGTGACTAATGGTGATCTAGAAGGTGAACGTCCGAGCGCAGCAGAAAGTGATTATGCGCTGATCCGTGTACGGG
TAACCAATAAAGACACCGGCTTGTTAGTGTTCGGTGGCGCGGACTTTAAAGAAGTCGATGTGCTGGACTTTACCGGTATG
GCGGCTGCGGGAACCTGGGATATCACCCCGTCTCTGACAGATATCCAGGCGGTGATGGCCGAAGTTGGTGCCGAAAATAC
CGTGCTTTCGGTGTACTTCCGTCAGCCTTTTGTAATGGATGAAGCCAGCGGCCTGAAAGACGCCGGTGCTATTCTAGCGA
CTTTCGGCTCTAAGGATAATGCGCTGATGGACGTTGTTACTGGTGGGTTCAATCCAAGTGGCAAACTGCCGTTTGCACTG
GCTAACAGCAGTCAGGCGATTATCGACCAGGCGTCTGACGCACCGGGTTATGCTGAAGCAGATACGCTGTATCCATTCGG
TTTCGGTCTGAGCTACGAGTAA

Upstream 100 bases:

>100_bases
TTGACCGGGATCGGTATATTAACAATAATTGGTTAACCAAATGTTTATTCTTGTGTATAGTCCAGCGCACAATCAATGAT
AGCAATACGGAGTTTTATCC

Downstream 100 bases:

>100_bases
CGAGTAACGCTGAAAGGTAAGCTTGTTTAATAACGGCGCCAGAAATGGCGCCGTTTTTTTTGCCCAGCGGAAGCTGGCAA
ACCCGCTCACTTACAAGATA

Product: glycoside hydrolase family 3 protein

Products: NA

Alternate protein names: Beta-glucosidase; Cellobiase; Gentiobiase; Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 753; Mature: 753

Protein sequence:

>753_residues
MKNKMNKVFSVTPIALAVFLAGCNNDVIETTQVVKAEFAQTKLDARGVDLISTDGYQFKDLNKNGILNVYEDWRKTVDER
VGDLVSQMTLEEKVGMMLIDTMNAAAYGSVNGTHVDYIEQQKMTRFIFRNAILPQNEVDALPIGERAPGGDIVTGRASAS
ISPSEAAQYMNIVQELSESTRLGIPALFKSNARNHNDPNARAGINVSAGAFSEWPKEAGLAATRDMELIGEFAQIMRTEW
NAIGLRGMYGYMADLSTEPRWYRVHETFTEDSDLASEIMTVLVSNLQGKEVTPSSVVLTMKHFPGGGPQFLGLDPHYMAG
QHQSYPTGNFDYHVKPFKAAIDAGVAALMPYYGIVGGGEWSLSNPDETNLDVGGIQLAEVVSDRVQDTVRVPYNGYSTTE
GTPAGNVGIAFSKGILSDLLRRDLGFSGVINSDTGIIGETNNGLSDTDTIQNNRAWGLQDKDKSEQLVVAIEAGTDVFSG
FHSNSEVRTLVEQGLVSEARIDESVKRLLKVQFELGLFENPYVDPVRANAIVGNASFQEKALLAQRKAVVLLDNKVAEGA
VEAILPLPAAANLYTMGMDSGVVEGYGYTVTNGDLEGERPSAAESDYALIRVRVTNKDTGLLVFGGADFKEVDVLDFTGM
AAAGTWDITPSLTDIQAVMAEVGAENTVLSVYFRQPFVMDEASGLKDAGAILATFGSKDNALMDVVTGGFNPSGKLPFAL
ANSSQAIIDQASDAPGYAEADTLYPFGFGLSYE

Sequences:

>Translated_753_residues
MKNKMNKVFSVTPIALAVFLAGCNNDVIETTQVVKAEFAQTKLDARGVDLISTDGYQFKDLNKNGILNVYEDWRKTVDER
VGDLVSQMTLEEKVGMMLIDTMNAAAYGSVNGTHVDYIEQQKMTRFIFRNAILPQNEVDALPIGERAPGGDIVTGRASAS
ISPSEAAQYMNIVQELSESTRLGIPALFKSNARNHNDPNARAGINVSAGAFSEWPKEAGLAATRDMELIGEFAQIMRTEW
NAIGLRGMYGYMADLSTEPRWYRVHETFTEDSDLASEIMTVLVSNLQGKEVTPSSVVLTMKHFPGGGPQFLGLDPHYMAG
QHQSYPTGNFDYHVKPFKAAIDAGVAALMPYYGIVGGGEWSLSNPDETNLDVGGIQLAEVVSDRVQDTVRVPYNGYSTTE
GTPAGNVGIAFSKGILSDLLRRDLGFSGVINSDTGIIGETNNGLSDTDTIQNNRAWGLQDKDKSEQLVVAIEAGTDVFSG
FHSNSEVRTLVEQGLVSEARIDESVKRLLKVQFELGLFENPYVDPVRANAIVGNASFQEKALLAQRKAVVLLDNKVAEGA
VEAILPLPAAANLYTMGMDSGVVEGYGYTVTNGDLEGERPSAAESDYALIRVRVTNKDTGLLVFGGADFKEVDVLDFTGM
AAAGTWDITPSLTDIQAVMAEVGAENTVLSVYFRQPFVMDEASGLKDAGAILATFGSKDNALMDVVTGGFNPSGKLPFAL
ANSSQAIIDQASDAPGYAEADTLYPFGFGLSYE
>Mature_753_residues
MKNKMNKVFSVTPIALAVFLAGCNNDVIETTQVVKAEFAQTKLDARGVDLISTDGYQFKDLNKNGILNVYEDWRKTVDER
VGDLVSQMTLEEKVGMMLIDTMNAAAYGSVNGTHVDYIEQQKMTRFIFRNAILPQNEVDALPIGERAPGGDIVTGRASAS
ISPSEAAQYMNIVQELSESTRLGIPALFKSNARNHNDPNARAGINVSAGAFSEWPKEAGLAATRDMELIGEFAQIMRTEW
NAIGLRGMYGYMADLSTEPRWYRVHETFTEDSDLASEIMTVLVSNLQGKEVTPSSVVLTMKHFPGGGPQFLGLDPHYMAG
QHQSYPTGNFDYHVKPFKAAIDAGVAALMPYYGIVGGGEWSLSNPDETNLDVGGIQLAEVVSDRVQDTVRVPYNGYSTTE
GTPAGNVGIAFSKGILSDLLRRDLGFSGVINSDTGIIGETNNGLSDTDTIQNNRAWGLQDKDKSEQLVVAIEAGTDVFSG
FHSNSEVRTLVEQGLVSEARIDESVKRLLKVQFELGLFENPYVDPVRANAIVGNASFQEKALLAQRKAVVLLDNKVAEGA
VEAILPLPAAANLYTMGMDSGVVEGYGYTVTNGDLEGERPSAAESDYALIRVRVTNKDTGLLVFGGADFKEVDVLDFTGM
AAAGTWDITPSLTDIQAVMAEVGAENTVLSVYFRQPFVMDEASGLKDAGAILATFGSKDNALMDVVTGGFNPSGKLPFAL
ANSSQAIIDQASDAPGYAEADTLYPFGFGLSYE

Specific function: Exhibits both beta-glucosidase and beta-xylosidase activities [H]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788453, Length=653, Percent_Identity=25.5742725880551, Blast_Score=111, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: =3.2.1.21; =3.2.1.37 [H]

Molecular weight: Translated: 81138; Mature: 81138

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKMNKVFSVTPIALAVFLAGCNNDVIETTQVVKAEFAQTKLDARGVDLISTDGYQFKD
CCCCHHHHEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEE
LNKNGILNVYEDWRKTVDERVGDLVSQMTLEEKVGMMLIDTMNAAAYGSVNGTHVDYIEQ
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCHHHHHH
QKMTRFIFRNAILPQNEVDALPIGERAPGGDIVTGRASASISPSEAAQYMNIVQELSEST
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
RLGIPALFKSNARNHNDPNARAGINVSAGAFSEWPKEAGLAATRDMELIGEFAQIMRTEW
CCCCCHHHHCCCCCCCCCCCCCCCEECCCCCHHCHHHCCCCCHHHHHHHHHHHHHHHHCC
NAIGLRGMYGYMADLSTEPRWYRVHETFTEDSDLASEIMTVLVSNLQGKEVTPSSVVLTM
CCEECHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
KHFPGGGPQFLGLDPHYMAGQHQSYPTGNFDYHVKPFKAAIDAGVAALMPYYGIVGGGEW
EECCCCCCCEECCCCHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHEECCCCC
SLSNPDETNLDVGGIQLAEVVSDRVQDTVRVPYNGYSTTEGTPAGNVGIAFSKGILSDLL
CCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHH
RRDLGFSGVINSDTGIIGETNNGLSDTDTIQNNRAWGLQDKDKSEQLVVAIEAGTDVFSG
HHHCCCCCEECCCCCEEECCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHC
FHSNSEVRTLVEQGLVSEARIDESVKRLLKVQFELGLFENPYVDPVRANAIVGNASFQEK
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHH
ALLAQRKAVVLLDNKVAEGAVEAILPLPAAANLYTMGMDSGVVEGYGYTVTNGDLEGERP
HHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCC
SAAESDYALIRVRVTNKDTGLLVFGGADFKEVDVLDFTGMAAAGTWDITPSLTDIQAVMA
CCCCCCEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
EVGAENTVLSVYFRQPFVMDEASGLKDAGAILATFGSKDNALMDVVTGGFNPSGKLPFAL
HHCCCCCEEEEEECCCEEECCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEE
ANSSQAIIDQASDAPGYAEADTLYPFGFGLSYE
CCCCHHHHCCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MKNKMNKVFSVTPIALAVFLAGCNNDVIETTQVVKAEFAQTKLDARGVDLISTDGYQFKD
CCCCHHHHEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEE
LNKNGILNVYEDWRKTVDERVGDLVSQMTLEEKVGMMLIDTMNAAAYGSVNGTHVDYIEQ
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEECCCCCCCHHHHHH
QKMTRFIFRNAILPQNEVDALPIGERAPGGDIVTGRASASISPSEAAQYMNIVQELSEST
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
RLGIPALFKSNARNHNDPNARAGINVSAGAFSEWPKEAGLAATRDMELIGEFAQIMRTEW
CCCCCHHHHCCCCCCCCCCCCCCCEECCCCCHHCHHHCCCCCHHHHHHHHHHHHHHHHCC
NAIGLRGMYGYMADLSTEPRWYRVHETFTEDSDLASEIMTVLVSNLQGKEVTPSSVVLTM
CCEECHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
KHFPGGGPQFLGLDPHYMAGQHQSYPTGNFDYHVKPFKAAIDAGVAALMPYYGIVGGGEW
EECCCCCCCEECCCCHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHEECCCCC
SLSNPDETNLDVGGIQLAEVVSDRVQDTVRVPYNGYSTTEGTPAGNVGIAFSKGILSDLL
CCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHH
RRDLGFSGVINSDTGIIGETNNGLSDTDTIQNNRAWGLQDKDKSEQLVVAIEAGTDVFSG
HHHCCCCCEECCCCCEEECCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEEEECCCHHHHC
FHSNSEVRTLVEQGLVSEARIDESVKRLLKVQFELGLFENPYVDPVRANAIVGNASFQEK
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHH
ALLAQRKAVVLLDNKVAEGAVEAILPLPAAANLYTMGMDSGVVEGYGYTVTNGDLEGERP
HHHHHCCEEEEECCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCC
SAAESDYALIRVRVTNKDTGLLVFGGADFKEVDVLDFTGMAAAGTWDITPSLTDIQAVMA
CCCCCCEEEEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
EVGAENTVLSVYFRQPFVMDEASGLKDAGAILATFGSKDNALMDVVTGGFNPSGKLPFAL
HHCCCCCEEEEEECCCEEECCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCEEE
ANSSQAIIDQASDAPGYAEADTLYPFGFGLSYE
CCCCHHHHCCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7891660 [H]