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The map label for this gene is slmA [H]

Identifier: 119943852

GI number: 119943852

Start: 80294

End: 80896

Strand: Direct

Name: slmA [H]

Synonym: Ping_0059

Alternate gene names: 119943852

Gene position: 80294-80896 (Clockwise)

Preceding gene: 119943851

Following gene: 119943856

Centisome position: 1.76

GC content: 37.15

Gene sequence:

>603_bases
ATGCTGGCAAAAACAACCAAAAAGAAAGTAAATCGCAAGGAAGATATTTTACACGCATTGGCTAAAATGCTTGAAAGTCA
ACCTGGTCAGCGTATTACAACTGCAAAATTAGCAGCTGAAGTTGGCGTTTCGGAAGCCGCGTTATATCGTCATTTTCCAA
GTAAAGCGCGTATGTTCGAAGGGTTAATTGATTACATTGAATCAACTATTTTTACGCAAATAAATTTAATTAAAGAACAG
CAAAAACAAACATTTGTACGTATTGAGCATATATTATATTTTTTATTAGGTTTTGCAGAGCAAAATCCGGGTATTACGCG
CATTTTAACCGGGGATGCTTTATTAGGGGAGAATGAGCGCCTGCAGACCCGTATTGAACATGTTTTTTCAAAGTTAGAGT
CACAACTTAAACTGATCCTGAGGGAAAAAGCAATTTTTGATGGCGGTAAACTGAGTATTGACGAGGCTATCGTCGCGAAC
TTATTACTTGCTTACGTTGAAGGGCGTATGAGCCAATTTGTACGTAGTCAATTTAAACAGAAACCAACCCAATATTTTAA
TACTCAATGGCCATTTTTATACAGGCAGCTGCAACAAAGTTAA

Upstream 100 bases:

>100_bases
ATTGTTGATGAGTTTAAGAGCTCAGAACGAGGAGAGGGTGGATTTGGTCACTCAGGGAAACATTAATTTTAGTTTAAAAC
GACAAAGGAAGTTGTAGATT

Downstream 100 bases:

>100_bases
TCATAAATAAAGCGTTAAACTGCGTAGAAGCAGTGAATTGCAGGCTGATCATCTGCACAGTTTAATTTTCTATTTTTTCA
TTAACTTTTTAACGCTTTCC

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MLAKTTKKKVNRKEDILHALAKMLESQPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIDYIESTIFTQINLIKEQ
QKQTFVRIEHILYFLLGFAEQNPGITRILTGDALLGENERLQTRIEHVFSKLESQLKLILREKAIFDGGKLSIDEAIVAN
LLLAYVEGRMSQFVRSQFKQKPTQYFNTQWPFLYRQLQQS

Sequences:

>Translated_200_residues
MLAKTTKKKVNRKEDILHALAKMLESQPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIDYIESTIFTQINLIKEQ
QKQTFVRIEHILYFLLGFAEQNPGITRILTGDALLGENERLQTRIEHVFSKLESQLKLILREKAIFDGGKLSIDEAIVAN
LLLAYVEGRMSQFVRSQFKQKPTQYFNTQWPFLYRQLQQS
>Mature_200_residues
MLAKTTKKKVNRKEDILHALAKMLESQPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIDYIESTIFTQINLIKEQ
QKQTFVRIEHILYFLLGFAEQNPGITRILTGDALLGENERLQTRIEHVFSKLESQLKLILREKAIFDGGKLSIDEAIVAN
LLLAYVEGRMSQFVRSQFKQKPTQYFNTQWPFLYRQLQQS

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=199, Percent_Identity=55.2763819095477, Blast_Score=210, Evalue=5e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23091; Mature: 23091

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAKTTKKKVNRKEDILHALAKMLESQPGQRITTAKLAAEVGVSEAALYRHFPSKARMFE
CCCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
GLIDYIESTIFTQINLIKEQQKQTFVRIEHILYFLLGFAEQNPGITRILTGDALLGENER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCHH
LQTRIEHVFSKLESQLKLILREKAIFDGGKLSIDEAIVANLLLAYVEGRMSQFVRSQFKQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KPTQYFNTQWPFLYRQLQQS
CHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MLAKTTKKKVNRKEDILHALAKMLESQPGQRITTAKLAAEVGVSEAALYRHFPSKARMFE
CCCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCHHHHHHH
GLIDYIESTIFTQINLIKEQQKQTFVRIEHILYFLLGFAEQNPGITRILTGDALLGENER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCHH
LQTRIEHVFSKLESQLKLILREKAIFDGGKLSIDEAIVANLLLAYVEGRMSQFVRSQFKQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KPTQYFNTQWPFLYRQLQQS
CHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA