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The map label for this gene is radC [C]

Identifier: 119943849

GI number: 119943849

Start: 77684

End: 78361

Strand: Reverse

Name: radC [C]

Synonym: Ping_0056

Alternate gene names: 119943849

Gene position: 78361-77684 (Counterclockwise)

Preceding gene: 119943853

Following gene: 119943848

Centisome position: 1.72

GC content: 42.33

Gene sequence:

>678_bases
ATGACAAAATTAAAAGACTGGCCCAATCAGGAAAGACCGAGAGAAAAATTGCTGCAAAAAGGCACAGCGGCCCTTTCTGA
TGCTGAACTGCTTGCTATATTTTTACGTACGGGTTGCCGTGGTGTCGACGTCGTCACACTCTCCAAACAACTGCTAAGTC
AATTCGGCTCCTTACATGCTTTATTTGCTGCATCAGAATCAGATTTTTGTGAAAAAAAAGGGCTAGGACAGGCAAAATAT
GTGCAATTACAGGCCGTCCTTGAAATGTCCAGCCGCTATTTACAAGAACCCTTAAGTAAAGGTAACGCCTTAACCAGCGC
CGCACAAACTAAAGCCTTCTTAATCGCTAAAATGCACAATTTACCCTACGAGGTATTTGCGGCCATATTATTAGACACAC
AACATCGTATTATTCGCTTTCATGAGTTTTTCTTTGGTTCAATCGACTGCGCAACAGTCCACCCTCGAATCATTGCGCAA
AAAGTATTATCTGAAAATGCCGCGGCAATTATACTGGTCCATAATCATCCTTCCGGCGATCCGTCAGCAAGCGAAGCGGA
CAAAATGATCACCCAAAAAATCGTTTCTGCACTGCAATTAATAGACGTCCGAGTTTTAGATCATTTGGTCGTTGGGCACA
AAAAATGTACATCATTTGCAGAAAATGGATGGATTTAA

Upstream 100 bases:

>100_bases
CTTATCAAAAATTGGCTTAATAGCAATTTATTGACTGCCTTTCCCGTATTCACTGCCACTTAGCTATAGCCGTAATAGTT
AATTATCGGAATATTAGATC

Downstream 100 bases:

>100_bases
GGTATAAATTCAGAGTTTTGTTGATCTTTCATACTCAATCATGTATAAAATGCGCCCTCGACGCCTTTGGCGACGGCTAA
AAAAGGTGTTCGACTATTTT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTKLKDWPNQERPREKLLQKGTAALSDAELLAIFLRTGCRGVDVVTLSKQLLSQFGSLHALFAASESDFCEKKGLGQAKY
VQLQAVLEMSSRYLQEPLSKGNALTSAAQTKAFLIAKMHNLPYEVFAAILLDTQHRIIRFHEFFFGSIDCATVHPRIIAQ
KVLSENAAAIILVHNHPSGDPSASEADKMITQKIVSALQLIDVRVLDHLVVGHKKCTSFAENGWI

Sequences:

>Translated_225_residues
MTKLKDWPNQERPREKLLQKGTAALSDAELLAIFLRTGCRGVDVVTLSKQLLSQFGSLHALFAASESDFCEKKGLGQAKY
VQLQAVLEMSSRYLQEPLSKGNALTSAAQTKAFLIAKMHNLPYEVFAAILLDTQHRIIRFHEFFFGSIDCATVHPRIIAQ
KVLSENAAAIILVHNHPSGDPSASEADKMITQKIVSALQLIDVRVLDHLVVGHKKCTSFAENGWI
>Mature_224_residues
TKLKDWPNQERPREKLLQKGTAALSDAELLAIFLRTGCRGVDVVTLSKQLLSQFGSLHALFAASESDFCEKKGLGQAKYV
QLQAVLEMSSRYLQEPLSKGNALTSAAQTKAFLIAKMHNLPYEVFAAILLDTQHRIIRFHEFFFGSIDCATVHPRIIAQK
VLSENAAAIILVHNHPSGDPSASEADKMITQKIVSALQLIDVRVLDHLVVGHKKCTSFAENGWI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=45.0704225352113, Blast_Score=206, Evalue=1e-54,
Organism=Escherichia coli, GI1788997, Length=139, Percent_Identity=46.0431654676259, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=43.3566433566434, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1788312, Length=143, Percent_Identity=41.958041958042, Blast_Score=120, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y056_PSYIN (A1SR15)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_941529.1
- ProteinModelPortal:   A1SR15
- SMR:   A1SR15
- STRING:   A1SR15
- GeneID:   4624453
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_0056
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- PhylomeDB:   A1SR15
- BioCyc:   PING357804:PING_0056-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 24894; Mature: 24763

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLKDWPNQERPREKLLQKGTAALSDAELLAIFLRTGCRGVDVVTLSKQLLSQFGSLHA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHH
LFAASESDFCEKKGLGQAKYVQLQAVLEMSSRYLQEPLSKGNALTSAAQTKAFLIAKMHN
HHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
LPYEVFAAILLDTQHRIIRFHEFFFGSIDCATVHPRIIAQKVLSENAAAIILVHNHPSGD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
PSASEADKMITQKIVSALQLIDVRVLDHLVVGHKKCTSFAENGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TKLKDWPNQERPREKLLQKGTAALSDAELLAIFLRTGCRGVDVVTLSKQLLSQFGSLHA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHH
LFAASESDFCEKKGLGQAKYVQLQAVLEMSSRYLQEPLSKGNALTSAAQTKAFLIAKMHN
HHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
LPYEVFAAILLDTQHRIIRFHEFFFGSIDCATVHPRIIAQKVLSENAAAIILVHNHPSGD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
PSASEADKMITQKIVSALQLIDVRVLDHLVVGHKKCTSFAENGWI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA