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The map label for this gene is hcpA [H]

Identifier: 119943813

GI number: 119943813

Start: 28101

End: 28589

Strand: Direct

Name: hcpA [H]

Synonym: Ping_0019

Alternate gene names: 119943813

Gene position: 28101-28589 (Clockwise)

Preceding gene: 119943812

Following gene: 119943814

Centisome position: 0.62

GC content: 37.01

Gene sequence:

>489_bases
ATGGAATTTTCGGGTTATATGAAAATTGAAGGTGATATTCAGGGCGTTATTGAAGGCTCTTCAATTAGAAAAAATCGAGA
AACGAGTATTGATCTTTTTTCATTTAAACATGAAATTAAATTACCCACTAATGTGCAGTCAGGTATGGGAAATGGTCCGG
TTATTCATCAGCCAATTGTCTTATTAAAAGAGGTTGATAAAAGTACCCCAAAGCTATATCGCGCATTGGTTGAAAAAGAA
CGATTAAATACAGTTGAATTCGAATGGTTTCGATATACGGCGCAAGGTGAAGAGCTTGTTTATTATCGTATTGAATTAAT
AAATGCGCATATTATATCAATCTCTCCCTGGACGCCTGCATTAGAAAAAGCGGAGTCAGAATATTTACGTTTTATGGAAA
ATGTAACACTGGCCTATGAAGGTATTACTTGGAGTTGGGGGCCGGATGGTGATGTTACTTACCAAACCAATTGGCGGGGT
GAGCAATAA

Upstream 100 bases:

>100_bases
GATGGTTTGAGATTGAAATAGAGCTCAGCCCGCATATGAAATACTTAGGCAGTACTATCTCCATTAATACCCTTATTTTT
ATGAATGAAGAGGTCAGCTA

Downstream 100 bases:

>100_bases
TGTTAAGGCTTTCTGAAAAGCTTAACTTGCTGACTGTCAAAAATGAATCAGCTAAACAGCTTGAATCATTAAATATTGCC
ACATCGATGCGCAATTATTT

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MEFSGYMKIEGDIQGVIEGSSIRKNRETSIDLFSFKHEIKLPTNVQSGMGNGPVIHQPIVLLKEVDKSTPKLYRALVEKE
RLNTVEFEWFRYTAQGEELVYYRIELINAHIISISPWTPALEKAESEYLRFMENVTLAYEGITWSWGPDGDVTYQTNWRG
EQ

Sequences:

>Translated_162_residues
MEFSGYMKIEGDIQGVIEGSSIRKNRETSIDLFSFKHEIKLPTNVQSGMGNGPVIHQPIVLLKEVDKSTPKLYRALVEKE
RLNTVEFEWFRYTAQGEELVYYRIELINAHIISISPWTPALEKAESEYLRFMENVTLAYEGITWSWGPDGDVTYQTNWRG
EQ
>Mature_162_residues
MEFSGYMKIEGDIQGVIEGSSIRKNRETSIDLFSFKHEIKLPTNVQSGMGNGPVIHQPIVLLKEVDKSTPKLYRALVEKE
RLNTVEFEWFRYTAQGEELVYYRIELINAHIISISPWTPALEKAESEYLRFMENVTLAYEGITWSWGPDGDVTYQTNWRG
EQ

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18766; Mature: 18766

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSGYMKIEGDIQGVIEGSSIRKNRETSIDLFSFKHEIKLPTNVQSGMGNGPVIHQPIV
CCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEHHHHH
LLKEVDKSTPKLYRALVEKERLNTVEFEWFRYTAQGEELVYYRIELINAHIISISPWTPA
HHHHHCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCHH
LEKAESEYLRFMENVTLAYEGITWSWGPDGDVTYQTNWRGEQ
HHHHHHHHHHHHHCCEEEECCEEECCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MEFSGYMKIEGDIQGVIEGSSIRKNRETSIDLFSFKHEIKLPTNVQSGMGNGPVIHQPIV
CCCCCEEEECCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEHHHHH
LLKEVDKSTPKLYRALVEKERLNTVEFEWFRYTAQGEELVYYRIELINAHIISISPWTPA
HHHHHCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCHH
LEKAESEYLRFMENVTLAYEGITWSWGPDGDVTYQTNWRGEQ
HHHHHHHHHHHHHCCEEEECCEEECCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]