Click here to switch to the map view.

The map label for this gene is ydjX [C]

Identifier: 119871341

GI number: 119871341

Start: 5552635

End: 5553297

Strand: Direct

Name: ydjX [C]

Synonym: Mkms_5315

Alternate gene names: 119871341

Gene position: 5552635-5553297 (Clockwise)

Preceding gene: 119871338

Following gene: 119871342

Centisome position: 96.78

GC content: 73.0

Gene sequence:

>663_bases
GTGACCTCCCGGCGGCGCCACATCGCGCGGCTGGCCGTCTTCGCCGCGCTGGTGTTCGGCCTGTTCTATCTGGTGGCGGT
GGAGCGGGTGATCGAGGTGGACGCGGTCCGCGACGCGGTCGCCGCGACCGGGCCCGTCGCCCCGCTCACCTACGTCGTGG
TGTCGGCGACACTCGGTGCGCTGTTCGTACCCGGTCCGCTGCTGGCGGGCGGCAGCGGTCTGCTGTTCGGTCCGGTGCTC
GGCACGTTCGTGACGCTGGGCGCAACGGTCGGCACGGCGGTCGTTGCCAGCCTCGTGGGGCGGCGGGCCGGACGGGACAG
CGCCCGCGCGCTGCTGGGACCCGAGCGGGCGGAGCTACTCGACACGCAGATCGAACGGCGCGGCCTGTGGGCGGTGGTGG
GACAGCGGTTCATCCCCGGCATCTCGGACGCGCTGGCCTCGTATGCGTTCGGCGCGTTCGGGGTTCCGCTGTGGCAGATG
GCGGTCGGGGCGTTCATCGGTTCGGTGCCGCGGGCGTTCGTCTACACGGCATTGGGTGCGTCGATCGGCGACCTGTCGTC
GCCGTTGGCCTACACGGCGATCGGCATCTGGGTGGTGACCGCGGTGGTGGGCGCCTTCGCCGCGCACCGCGGTTACCGGA
GCTGGCGCAGGCGCCGGCCGTAG

Upstream 100 bases:

>100_bases
AGCAGGTTCTGCAGCGGGGGTGCCGATTCCGACATGCCGGGCCGGCTGGACATGGCCCCGAGGGTACTGCGTTGCGCAGC
CCTGCGGCAGGATTGCTCCG

Downstream 100 bases:

>100_bases
AGTCGCTGAGGTGAGCGCCGGGGAGAGCCGCGCCGGGGTGGCCCTGACCAATCTCGACCAACCGCTGAGCCCGGATGCCG
GGGCGACCAAACGCGACCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTSRRRHIARLAVFAALVFGLFYLVAVERVIEVDAVRDAVAATGPVAPLTYVVVSATLGALFVPGPLLAGGSGLLFGPVL
GTFVTLGATVGTAVVASLVGRRAGRDSARALLGPERAELLDTQIERRGLWAVVGQRFIPGISDALASYAFGAFGVPLWQM
AVGAFIGSVPRAFVYTALGASIGDLSSPLAYTAIGIWVVTAVVGAFAAHRGYRSWRRRRP

Sequences:

>Translated_220_residues
MTSRRRHIARLAVFAALVFGLFYLVAVERVIEVDAVRDAVAATGPVAPLTYVVVSATLGALFVPGPLLAGGSGLLFGPVL
GTFVTLGATVGTAVVASLVGRRAGRDSARALLGPERAELLDTQIERRGLWAVVGQRFIPGISDALASYAFGAFGVPLWQM
AVGAFIGSVPRAFVYTALGASIGDLSSPLAYTAIGIWVVTAVVGAFAAHRGYRSWRRRRP
>Mature_219_residues
TSRRRHIARLAVFAALVFGLFYLVAVERVIEVDAVRDAVAATGPVAPLTYVVVSATLGALFVPGPLLAGGSGLLFGPVLG
TFVTLGATVGTAVVASLVGRRAGRDSARALLGPERAELLDTQIERRGLWAVVGQRFIPGISDALASYAFGAFGVPLWQMA
VGAFIGSVPRAFVYTALGASIGDLSSPLAYTAIGIWVVTAVVGAFAAHRGYRSWRRRRP

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=228, Percent_Identity=19.7368421052632, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 23023; Mature: 22892

Theoretical pI: Translated: 11.74; Mature: 11.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRRRHIARLAVFAALVFGLFYLVAVERVIEVDAVRDAVAATGPVAPLTYVVVSATLGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LFVPGPLLAGGSGLLFGPVLGTFVTLGATVGTAVVASLVGRRAGRDSARALLGPERAELL
HHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH
DTQIERRGLWAVVGQRFIPGISDALASYAFGAFGVPLWQMAVGAFIGSVPRAFVYTALGA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIGDLSSPLAYTAIGIWVVTAVVGAFAAHRGYRSWRRRRP
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TSRRRHIARLAVFAALVFGLFYLVAVERVIEVDAVRDAVAATGPVAPLTYVVVSATLGA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LFVPGPLLAGGSGLLFGPVLGTFVTLGATVGTAVVASLVGRRAGRDSARALLGPERAELL
HHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHH
DTQIERRGLWAVVGQRFIPGISDALASYAFGAFGVPLWQMAVGAFIGSVPRAFVYTALGA
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIGDLSSPLAYTAIGIWVVTAVVGAFAAHRGYRSWRRRRP
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]