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The map label for this gene is ykoU [H]

Identifier: 119871342

GI number: 119871342

Start: 5553335

End: 5554267

Strand: Direct

Name: ykoU [H]

Synonym: Mkms_5316

Alternate gene names: 119871342

Gene position: 5553335-5554267 (Clockwise)

Preceding gene: 119871341

Following gene: 119871343

Centisome position: 96.79

GC content: 71.7

Gene sequence:

>933_bases
GTGGCCCTGACCAATCTCGACCAACCGCTGAGCCCGGATGCCGGGGCGACCAAACGCGACCTCGTCGACTACCTCGATGC
GGTGGCCGACCGGATCGTGCCCGGCCTGGCCGGGCGTCCCCTCACGGTCCTGCGGGTGCTGCGCGGGCAGGCGCCGTTCA
TGCAGAAGAACGCGCCGAAGTACACCCCGGAGTGGGTGAAGACCGTCGCGATCTGGGCGGAGAGCTCACACCGGGAGGTG
CGGTATCCGCTGTGCGACGACCGCCGCACCCTGCTGTGGCTGGCGAATCAGCGTGCGGTCGAGTACCACCCGACGCTCGG
TCTGGCCGAGAACATCTACCGGCCCACCCACCTGGTGCTCGATCTGGATCCGCCGACGGAGACCGATTTCGCGGCGGTCG
TCGACGTCGCGCAGTTGGTCCGGCAGGCGCTCGCCGACAGCGGACTCGCGGGTGAGGTCAAGACGAGCGGGGCCAAGGGC
CTGCACGTCTTCGTACCGGTCGACGACAGCGCACCGGTCGAGGACGTCGCCGCCGCGACGCGGGCGCTGGCGGCGCGTGC
GGAAGCCCTCGACCCGTCGATCGCCACCACGGCGTTCATCGTCGAGGACCGCCACGGCAAGGTCTTCGTCGATTCGACGC
GGGCCGGCGGTGCCACCGTCGCGGCGGCCTACAGCCCGCGGTTGCGGCCGGGCACTCCGGTGTCGTTTCCCCTCGACTGG
TCGGAGCTGTCCGCGGTCACGCCGGGGGACTTCACCGTGCACACCGCCGTCGAAGCGCTCGACGGCCGCGATCCGTGGGC
CGAGTCGATGCCTGCCCCGCAGCGGTTGCCCGACGAGCTCATCGAACACGGCCGCACCATCCCCGTCGCCCGGGTGGCCG
CGATGCACGAAGGCAAGCGCCGCGCCAAGGCCCGCCGCACCGGCGGTGCGTGA

Upstream 100 bases:

>100_bases
GCGGTGGTGGGCGCCTTCGCCGCGCACCGCGGTTACCGGAGCTGGCGCAGGCGCCGGCCGTAGAGTCGCTGAGGTGAGCG
CCGGGGAGAGCCGCGCCGGG

Downstream 100 bases:

>100_bases
CCACCGCCGCTTCAGGCACGCGAAAGTGCCATTCGACAACCAATTACTGCCACTGGAATTAAACGGCTGACCTGCGGGTT
CAGTAGATCAGACCACAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MALTNLDQPLSPDAGATKRDLVDYLDAVADRIVPGLAGRPLTVLRVLRGQAPFMQKNAPKYTPEWVKTVAIWAESSHREV
RYPLCDDRRTLLWLANQRAVEYHPTLGLAENIYRPTHLVLDLDPPTETDFAAVVDVAQLVRQALADSGLAGEVKTSGAKG
LHVFVPVDDSAPVEDVAAATRALAARAEALDPSIATTAFIVEDRHGKVFVDSTRAGGATVAAAYSPRLRPGTPVSFPLDW
SELSAVTPGDFTVHTAVEALDGRDPWAESMPAPQRLPDELIEHGRTIPVARVAAMHEGKRRAKARRTGGA

Sequences:

>Translated_310_residues
MALTNLDQPLSPDAGATKRDLVDYLDAVADRIVPGLAGRPLTVLRVLRGQAPFMQKNAPKYTPEWVKTVAIWAESSHREV
RYPLCDDRRTLLWLANQRAVEYHPTLGLAENIYRPTHLVLDLDPPTETDFAAVVDVAQLVRQALADSGLAGEVKTSGAKG
LHVFVPVDDSAPVEDVAAATRALAARAEALDPSIATTAFIVEDRHGKVFVDSTRAGGATVAAAYSPRLRPGTPVSFPLDW
SELSAVTPGDFTVHTAVEALDGRDPWAESMPAPQRLPDELIEHGRTIPVARVAAMHEGKRRAKARRTGGA
>Mature_309_residues
ALTNLDQPLSPDAGATKRDLVDYLDAVADRIVPGLAGRPLTVLRVLRGQAPFMQKNAPKYTPEWVKTVAIWAESSHREVR
YPLCDDRRTLLWLANQRAVEYHPTLGLAENIYRPTHLVLDLDPPTETDFAAVVDVAQLVRQALADSGLAGEVKTSGAKGL
HVFVPVDDSAPVEDVAAATRALAARAEALDPSIATTAFIVEDRHGKVFVDSTRAGGATVAAAYSPRLRPGTPVSFPLDWS
ELSAVTPGDFTVHTAVEALDGRDPWAESMPAPQRLPDELIEHGRTIPVARVAAMHEGKRRAKARRTGGA

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 33449; Mature: 33318

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTNLDQPLSPDAGATKRDLVDYLDAVADRIVPGLAGRPLTVLRVLRGQAPFMQKNAPK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHCCCCC
YTPEWVKTVAIWAESSHREVRYPLCDDRRTLLWLANQRAVEYHPTLGLAENIYRPTHLVL
CCHHHHHHHHHEECCCCCEEECCCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCEEEEE
DLDPPTETDFAAVVDVAQLVRQALADSGLAGEVKTSGAKGLHVFVPVDDSAPVEDVAAAT
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
RALAARAEALDPSIATTAFIVEDRHGKVFVDSTRAGGATVAAAYSPRLRPGTPVSFPLDW
HHHHHHHHHCCCCHHEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCH
SELSAVTPGDFTVHTAVEALDGRDPWAESMPAPQRLPDELIEHGRTIPVARVAAMHEGKR
HHHCCCCCCCEEHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
RAKARRTGGA
HHHHHHCCCC
>Mature Secondary Structure 
ALTNLDQPLSPDAGATKRDLVDYLDAVADRIVPGLAGRPLTVLRVLRGQAPFMQKNAPK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHCCCCC
YTPEWVKTVAIWAESSHREVRYPLCDDRRTLLWLANQRAVEYHPTLGLAENIYRPTHLVL
CCHHHHHHHHHEECCCCCEEECCCCCCCCEEEEEECCCEEEECCCCCHHHHCCCCEEEEE
DLDPPTETDFAAVVDVAQLVRQALADSGLAGEVKTSGAKGLHVFVPVDDSAPVEDVAAAT
ECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
RALAARAEALDPSIATTAFIVEDRHGKVFVDSTRAGGATVAAAYSPRLRPGTPVSFPLDW
HHHHHHHHHCCCCHHEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCH
SELSAVTPGDFTVHTAVEALDGRDPWAESMPAPQRLPDELIEHGRTIPVARVAAMHEGKR
HHHCCCCCCCEEHHHHHHHHCCCCCHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
RAKARRTGGA
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]