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The map label for this gene is ydcN [C]

Identifier: 119871013

GI number: 119871013

Start: 5225738

End: 5226397

Strand: Direct

Name: ydcN [C]

Synonym: Mkms_4986

Alternate gene names: 119871013

Gene position: 5225738-5226397 (Clockwise)

Preceding gene: 119871012

Following gene: 119871014

Centisome position: 91.08

GC content: 67.88

Gene sequence:

>660_bases
GTGAGCCCATCCGAGGATTCTGCGCCGCTGCTGCGCAACAAGTCGGGCACCGCGCGCGAGCGTGACCCGCAGGAACCGGT
CGACGACACCGAGTTCGAGGCGGCGATCGGGCGCAACGTGCGCCAACTGCGGCAGCAGCACGGACTCACCGTCGCGGAGA
TGGCCGAGCGCGTCGGCATCTCCAAGGCCATGATGAGCAAGATCGAGAACGCGCAGACCTCCTGCAGCCTGTCCACGCTG
GCGCTGCTGGCCAAGGGGTTCGACGTACCGGTCACCACACTGTTCCGCGGTGCGGACGTCGAGCGCCCCGCCGCGTTCGT
CAAGGCGGGTACCGGCGCGCGGATCGTGCGCAACGGCACCAAGGAGGGCCACGACTACCAGTTGCTGGGCTCGCTGCGCG
GTGAGCACAAGCGGCTGGAATGCCTCGAGGTCACGCTGTCGGAGAAGAGCCGGACCTACCCGCTGTTCCAGCATCCCGGC
ACCGAGTTCATCTACATGCTCGAGGGCGTCATGGACTACAGCCACAGCCGCTCGGTGTACCGGCTGCACCCCGGCGATTC
GCTGCAGATCGACGGGGAGGGTGCGCACGGCCCCGTCGACCTGGTCGAACTGCCGATCCGGTTCCTGTCGGTGATCGCGT
TCCCGGACTCCGCCGTCTAG

Upstream 100 bases:

>100_bases
CCGGAGACCGATTTCCGGCTGTCCCGCTTCGCCGAGGGCGACCTGCTCCGCACGCCCTACCCGTACGTCGGTGCCGGCGA
GATGCGCTAGACAGGGTGCC

Downstream 100 bases:

>100_bases
CGCCGCATTTGGGTCGCGGTGCTGCGGCGCGCTACAGTGAGCTCACCATGTTTGTGCAGCGGGCGCTCCTTCTCGGCCGC
CGCGGCGGGGTCTGACCAGA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Cupin Domain Protein; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MSPSEDSAPLLRNKSGTARERDPQEPVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTL
ALLAKGFDVPVTTLFRGADVERPAAFVKAGTGARIVRNGTKEGHDYQLLGSLRGEHKRLECLEVTLSEKSRTYPLFQHPG
TEFIYMLEGVMDYSHSRSVYRLHPGDSLQIDGEGAHGPVDLVELPIRFLSVIAFPDSAV

Sequences:

>Translated_219_residues
MSPSEDSAPLLRNKSGTARERDPQEPVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTL
ALLAKGFDVPVTTLFRGADVERPAAFVKAGTGARIVRNGTKEGHDYQLLGSLRGEHKRLECLEVTLSEKSRTYPLFQHPG
TEFIYMLEGVMDYSHSRSVYRLHPGDSLQIDGEGAHGPVDLVELPIRFLSVIAFPDSAV
>Mature_218_residues
SPSEDSAPLLRNKSGTARERDPQEPVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTLA
LLAKGFDVPVTTLFRGADVERPAAFVKAGTGARIVRNGTKEGHDYQLLGSLRGEHKRLECLEVTLSEKSRTYPLFQHPGT
EFIYMLEGVMDYSHSRSVYRLHPGDSLQIDGEGAHGPVDLVELPIRFLSVIAFPDSAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24066; Mature: 23934

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPSEDSAPLLRNKSGTARERDPQEPVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCH
SKAMMSKIENAQTSCSLSTLALLAKGFDVPVTTLFRGADVERPAAFVKAGTGARIVRNGT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCEEECCC
KEGHDYQLLGSLRGEHKRLECLEVTLSEKSRTYPLFQHPGTEFIYMLEGVMDYSHSRSVY
CCCCCEEHHHHHCCCHHHHHHHHEEHHCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCEE
RLHPGDSLQIDGEGAHGPVDLVELPIRFLSVIAFPDSAV
EECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SPSEDSAPLLRNKSGTARERDPQEPVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCH
SKAMMSKIENAQTSCSLSTLALLAKGFDVPVTTLFRGADVERPAAFVKAGTGARIVRNGT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCEEECCC
KEGHDYQLLGSLRGEHKRLECLEVTLSEKSRTYPLFQHPGTEFIYMLEGVMDYSHSRSVY
CCCCCEEHHHHHCCCHHHHHHHHEEHHCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCEE
RLHPGDSLQIDGEGAHGPVDLVELPIRFLSVIAFPDSAV
EECCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA