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The map label for this gene is yncC [C]

Identifier: 119870984

GI number: 119870984

Start: 5196359

End: 5197066

Strand: Direct

Name: yncC [C]

Synonym: Mkms_4957

Alternate gene names: 119870984

Gene position: 5196359-5197066 (Clockwise)

Preceding gene: 119870979

Following gene: 119870985

Centisome position: 90.57

GC content: 70.48

Gene sequence:

>708_bases
ATGCCCGGTCGTCGTCACTCCGCTCTGTTGACGAGACTGTCCGCCAACCGATCGCCGGATTCGCGGCGTGCCGTCGTCGA
CGAGTTGCGGCGCGTGATCCTCGAGGGCGGGGCCCCACCGGGGTCTCCCATCCCGGTCAACGACGTCGCCGAGGTGCTCG
GCGTCAGTGCCATCCCGGTGCGGGAAAGCCTCAAGACGCTCGTCGCCGAGGGTCTTGTCGCCCACCAGCCCAACGTCGGC
TACAGCGTCGCGCTCCTGACGACCACCGAACTCGCCGAGATGTACATCGTCCGCGAGACGCTCGAGTCGGCGGCACTCGC
CGCGGCGGTCGCCCATGCGTCGGAGGCCGAGCGCACCGCGGTGGCGGCGGCGCACCGCCTGCTGGAGCGGGCGGTGCGCG
AAGACGACCGGCACTCCTACCACCGCCAGAGTCGGCACTTCCACATCGGCATGGCCCGGCCCTCCGGGATGCTGCGTCTG
GTGCACATGCTCGAATCCGCCTGGAACATCACCGAACCCGTGCAGTTGATGGTTCACGTGCAACCGTCGGACCGGGCGGC
GCTGCACACCGACCACGGGCTCATGCTCGAGGCCTTCCTCGACCGCGACGTCGATGCGCTGCTCGCCACGAGCCGGGATC
ACCACCGGCGGCTCAACACCGTGGTGGCGGCGCTCCCGCCGGACAGCGGCCTGGTGACGCGGGGCTGA

Upstream 100 bases:

>100_bases
GGAAAAGTCTGCCACCACCCTGACAGTCCAAGAGTGACATGTCAATAGTGGAATATCTGGAACGTGGGCGCACGCAGGCC
CCTCGTAGCAGGATGTCGCC

Downstream 100 bases:

>100_bases
CAGCGCGCCAATGAGTCGGCCGTGTTGCCGAACGCGCTCAAATATATTTGCGGCGCAACGACGGTGAAACACACCGCAGC
TACGTTCCGTTCATCGCCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPGRRHSALLTRLSANRSPDSRRAVVDELRRVILEGGAPPGSPIPVNDVAEVLGVSAIPVRESLKTLVAEGLVAHQPNVG
YSVALLTTTELAEMYIVRETLESAALAAAVAHASEAERTAVAAAHRLLERAVREDDRHSYHRQSRHFHIGMARPSGMLRL
VHMLESAWNITEPVQLMVHVQPSDRAALHTDHGLMLEAFLDRDVDALLATSRDHHRRLNTVVAALPPDSGLVTRG

Sequences:

>Translated_235_residues
MPGRRHSALLTRLSANRSPDSRRAVVDELRRVILEGGAPPGSPIPVNDVAEVLGVSAIPVRESLKTLVAEGLVAHQPNVG
YSVALLTTTELAEMYIVRETLESAALAAAVAHASEAERTAVAAAHRLLERAVREDDRHSYHRQSRHFHIGMARPSGMLRL
VHMLESAWNITEPVQLMVHVQPSDRAALHTDHGLMLEAFLDRDVDALLATSRDHHRRLNTVVAALPPDSGLVTRG
>Mature_234_residues
PGRRHSALLTRLSANRSPDSRRAVVDELRRVILEGGAPPGSPIPVNDVAEVLGVSAIPVRESLKTLVAEGLVAHQPNVGY
SVALLTTTELAEMYIVRETLESAALAAAVAHASEAERTAVAAAHRLLERAVREDDRHSYHRQSRHFHIGMARPSGMLRLV
HMLESAWNITEPVQLMVHVQPSDRAALHTDHGLMLEAFLDRDVDALLATSRDHHRRLNTVVAALPPDSGLVTRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25645; Mature: 25513

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGRRHSALLTRLSANRSPDSRRAVVDELRRVILEGGAPPGSPIPVNDVAEVLGVSAIPV
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCH
RESLKTLVAEGLVAHQPNVGYSVALLTTTELAEMYIVRETLESAALAAAVAHASEAERTA
HHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAAHRLLERAVREDDRHSYHRQSRHFHIGMARPSGMLRLVHMLESAWNITEPVQLMVHV
HHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEE
QPSDRAALHTDHGLMLEAFLDRDVDALLATSRDHHRRLNTVVAALPPDSGLVTRG
CCCCCCEEECCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCC
>Mature Secondary Structure 
PGRRHSALLTRLSANRSPDSRRAVVDELRRVILEGGAPPGSPIPVNDVAEVLGVSAIPV
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCH
RESLKTLVAEGLVAHQPNVGYSVALLTTTELAEMYIVRETLESAALAAAVAHASEAERTA
HHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAAAHRLLERAVREDDRHSYHRQSRHFHIGMARPSGMLRLVHMLESAWNITEPVQLMVHV
HHHHHHHHHHHHHCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEE
QPSDRAALHTDHGLMLEAFLDRDVDALLATSRDHHRRLNTVVAALPPDSGLVTRG
CCCCCCEEECCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA