Click here to switch to the map view.

The map label for this gene is alc [H]

Identifier: 119870895

GI number: 119870895

Start: 5094793

End: 5095803

Strand: Direct

Name: alc [H]

Synonym: Mkms_4867

Alternate gene names: 119870895

Gene position: 5094793-5095803 (Clockwise)

Preceding gene: 119870894

Following gene: 119870896

Centisome position: 88.8

GC content: 69.63

Gene sequence:

>1011_bases
GTGAGCACCGCGCATTCACATTTCCTTGCACTGCCCGATCTGGCCTCCCGCGCGGCCGGCGCCGCCGTCGTGTGGGCCAA
CGACGAACTGTTCGCCGAGAAGGAGAACCTGATCATCCCGGCGGCCGCCCAGCACCGGCCTGCGACGTTCGGCCACAAGG
GTCAGGTGTACGACGGGTGGGAGACGCGCCGCAGCCGCGGCGCCGACAGGGAGTCCTGCGATTCGGCGATCATCCGGCTC
GGTGCACCCGGCGTCGTACGCGGCGTGGTCGTGGACACCGCGTGGTTCACCGGCAACTATCCGCCGGAGGTGTCGGTCGA
GGCCGCCTACGTTCCCGGCCATCCTTCGATTGAGGAACTGCTCGGCCGGCACTGGACGACGATCGTCGAGCGCAGCCCGG
TCGACGGCGACACCCGCAATCCGTTCGAGGTGGCCTCGGGTCGCCGCTGGTCGCACGTGAGGTTGTCGATGTATCCCGAC
GGCGGTGTGGCCCGGCTTCGTGTGCACGGTGAGGGCCTGCTCGACCCGCAGTTCGCCGAATTACCGCTCGACCTCGCGGC
GTTGGAGCACGGTGGCCGAATCACGGGCTGCTCCAACATGTTCTACAGCTCGCCGAACAATCTGCTGCTGCCGGGCACGG
CCCGCACCATGGGCGACGGTTGGGAGACCTCGCGGCGCCGCGACGCCGGAAACGACTGGGTGCAGGTGCGATTGGCGGCC
AGGGGCGTGTTGAGCTTCGCCGAACTCGACACGTCGTATTTCATCGGCAACGCGCCCGGTTCCGCGCGGCTGCGGGGACG
CGACGGTGACGGCGAATGGTTCGACCTGTTGGACGAGGTGGCGTTGCAGCCCGACACCCGGCACCGCTTCCTCATCGCGT
CCGAGCGGCCGGTGACCGAAGCGCGCCTCGACGTGTTCCCCGACGGGGGGATGGCGCGGCTGCGCCTGTTCGGCCGGCTC
ACCGACGACGGCCTGCGCGCAGTCGCCGAGCGGTGGAGCCTCACCGGCTGA

Upstream 100 bases:

>100_bases
CGCAACGAACTCGCCCGGATCAACCGGATCCGGCTCGAACGGATGCTCGGCCCCGAAGGCGGCTACCACAACTGGTGAGT
TCCTCGCCTACGCTGCGCGG

Downstream 100 bases:

>100_bases
CATGTTCTTCCTCGTCCTCGCCGCCATCCTCGCGCTCATCCACCTGTACCTGTGGAAGCGGCTGGTCAAAGACACCACCG
GCCCGGGGCGCAGCCGACGG

Product: allantoicase

Products: NA

Alternate protein names: Allantoate amidinohydrolase [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSTAHSHFLALPDLASRAAGAAVVWANDELFAEKENLIIPAAAQHRPATFGHKGQVYDGWETRRSRGADRESCDSAIIRL
GAPGVVRGVVVDTAWFTGNYPPEVSVEAAYVPGHPSIEELLGRHWTTIVERSPVDGDTRNPFEVASGRRWSHVRLSMYPD
GGVARLRVHGEGLLDPQFAELPLDLAALEHGGRITGCSNMFYSSPNNLLLPGTARTMGDGWETSRRRDAGNDWVQVRLAA
RGVLSFAELDTSYFIGNAPGSARLRGRDGDGEWFDLLDEVALQPDTRHRFLIASERPVTEARLDVFPDGGMARLRLFGRL
TDDGLRAVAERWSLTG

Sequences:

>Translated_336_residues
MSTAHSHFLALPDLASRAAGAAVVWANDELFAEKENLIIPAAAQHRPATFGHKGQVYDGWETRRSRGADRESCDSAIIRL
GAPGVVRGVVVDTAWFTGNYPPEVSVEAAYVPGHPSIEELLGRHWTTIVERSPVDGDTRNPFEVASGRRWSHVRLSMYPD
GGVARLRVHGEGLLDPQFAELPLDLAALEHGGRITGCSNMFYSSPNNLLLPGTARTMGDGWETSRRRDAGNDWVQVRLAA
RGVLSFAELDTSYFIGNAPGSARLRGRDGDGEWFDLLDEVALQPDTRHRFLIASERPVTEARLDVFPDGGMARLRLFGRL
TDDGLRAVAERWSLTG
>Mature_335_residues
STAHSHFLALPDLASRAAGAAVVWANDELFAEKENLIIPAAAQHRPATFGHKGQVYDGWETRRSRGADRESCDSAIIRLG
APGVVRGVVVDTAWFTGNYPPEVSVEAAYVPGHPSIEELLGRHWTTIVERSPVDGDTRNPFEVASGRRWSHVRLSMYPDG
GVARLRVHGEGLLDPQFAELPLDLAALEHGGRITGCSNMFYSSPNNLLLPGTARTMGDGWETSRRRDAGNDWVQVRLAAR
GVLSFAELDTSYFIGNAPGSARLRGRDGDGEWFDLLDEVALQPDTRHRFLIASERPVTEARLDVFPDGGMARLRLFGRLT
DDGLRAVAERWSLTG

Specific function: Unknown

COG id: COG4266

COG function: function code F; Allantoicase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the allantoicase family [H]

Homologues:

Organism=Homo sapiens, GI144953901, Length=367, Percent_Identity=35.149863760218, Blast_Score=195, Evalue=5e-50,
Organism=Saccharomyces cerevisiae, GI6322220, Length=326, Percent_Identity=36.8098159509202, Blast_Score=178, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005164
- InterPro:   IPR015908
- InterPro:   IPR008979 [H]

Pfam domain/function: PF03561 Allantoicase [H]

EC number: =3.5.3.4 [H]

Molecular weight: Translated: 36836; Mature: 36704

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAHSHFLALPDLASRAAGAAVVWANDELFAEKENLIIPAAAQHRPATFGHKGQVYDGW
CCCCCCCEEECCHHHHHCCCEEEEEECCHHEECCCCEEEECCCCCCCCCCCCCCCEECCH
ETRRSRGADRESCDSAIIRLGAPGVVRGVVVDTAWFTGNYPPEVSVEAAYVPGHPSIEEL
HHHHHCCCCHHHHHHHHEECCCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHH
LGRHWTTIVERSPVDGDTRNPFEVASGRRWSHVRLSMYPDGGVARLRVHGEGLLDPQFAE
HHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCHHHH
LPLDLAALEHGGRITGCSNMFYSSPNNLLLPGTARTMGDGWETSRRRDAGNDWVQVRLAA
CCHHHHHHHCCCEEEEECCCEECCCCCEEECCCCCCCCCCCCCHHCCCCCCCEEEEEEEH
RGVLSFAELDTSYFIGNAPGSARLRGRDGDGEWFDLLDEVALQPDTRHRFLIASERPVTE
HHHHHHHHCCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCH
ARLDVFPDGGMARLRLFGRLTDDGLRAVAERWSLTG
HHEEECCCCCCEEEEEEECCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STAHSHFLALPDLASRAAGAAVVWANDELFAEKENLIIPAAAQHRPATFGHKGQVYDGW
CCCCCCEEECCHHHHHCCCEEEEEECCHHEECCCCEEEECCCCCCCCCCCCCCCEECCH
ETRRSRGADRESCDSAIIRLGAPGVVRGVVVDTAWFTGNYPPEVSVEAAYVPGHPSIEEL
HHHHHCCCCHHHHHHHHEECCCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHH
LGRHWTTIVERSPVDGDTRNPFEVASGRRWSHVRLSMYPDGGVARLRVHGEGLLDPQFAE
HHHHHHHHHHCCCCCCCCCCCHHHCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCHHHH
LPLDLAALEHGGRITGCSNMFYSSPNNLLLPGTARTMGDGWETSRRRDAGNDWVQVRLAA
CCHHHHHHHCCCEEEEECCCEECCCCCEEECCCCCCCCCCCCCHHCCCCCCCEEEEEEEH
RGVLSFAELDTSYFIGNAPGSARLRGRDGDGEWFDLLDEVALQPDTRHRFLIASERPVTE
HHHHHHHHCCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCH
ARLDVFPDGGMARLRLFGRLTDDGLRAVAERWSLTG
HHEEECCCCCCEEEEEEECCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA