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The map label for this gene is ymfC [H]

Identifier: 119870525

GI number: 119870525

Start: 4729030

End: 4729767

Strand: Direct

Name: ymfC [H]

Synonym: Mkms_4496

Alternate gene names: 119870525

Gene position: 4729030-4729767 (Clockwise)

Preceding gene: 119870524

Following gene: 119870526

Centisome position: 82.43

GC content: 68.97

Gene sequence:

>738_bases
ATGAGCGTCACGCACCCCGAGCACCGCTACCTGCAGGTGGCTCGCACCCTGCGCAAGGAGATCGTCGACGGGGTGTACCC
GGTCGGATCGCAGTTGCCCACCGAACACGAGTTGTGTGAGCGGTTCGCGGTCAGCCGCTTCACCATTCGGGAGGCACTGC
GCCGGCTGCGCGAGGACAACCTGGTCACCTCGCGCCCCAGGGCGGGCACCCTGGTGGTGCCGCGTCCGTCGGGTAACACC
TACGCCCAGGACGTGATGTCGATCGACGACCTGCTGGCGTTCGCCGCGGGCGCCCAGTTCACGGTCGAATCGAACGCCAC
CGTGACCGTCGACGCCGAACTCGCCGAGCGGACGCGGCTCGCGCTCGGCTCGGAATGGCTTGCGGTGACGGGCTATCGCC
AGGCCGACACGAACTCGACGCCGATCTGCCGCACCGAGTACTACATCAACCGCGCGTTCGCCGCCGTCGGCCGGCTGCTG
CCCCGCCACACCGGGCCGATCTTCCCCCTGATCGAGGACCTGTTCGGGGTGAGCGTGGTCGAGGTGCACCAGGAGATCGC
CGCGGTGGTGCTGCCCGCCGAACTGGCCCACCGGCTCGGTGTCGAACCCGGCAGTGCCGCACTGCAGATGCAGCGCACCT
ACACCACCTCCGACGGTGAGGTCGCACAGGTCACGGTGAACACCCATCCGTCGGCGCGCTACCGGCACTCGATGACGATG
CGCCGGGTCAGGGACTGA

Upstream 100 bases:

>100_bases
AGGGACCGTTCGCGGGGATCGCCGCGGCGCCGGACGGCACGCTGTTCGTCTCCGCCGACGGCGACGGCAGCGTGCTGGCG
TTACGACGCACCGCCCGCAC

Downstream 100 bases:

>100_bases
CGGTGGGTACCACGCTGGCCGATGCCCTGCGCGATGCCGCGCGGGACACACCGGACCGCGTGCTGGTGCGCGACGGCGAC
GATGAACTCACCTGTGGCGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSVTHPEHRYLQVARTLRKEIVDGVYPVGSQLPTEHELCERFAVSRFTIREALRRLREDNLVTSRPRAGTLVVPRPSGNT
YAQDVMSIDDLLAFAAGAQFTVESNATVTVDAELAERTRLALGSEWLAVTGYRQADTNSTPICRTEYYINRAFAAVGRLL
PRHTGPIFPLIEDLFGVSVVEVHQEIAAVVLPAELAHRLGVEPGSAALQMQRTYTTSDGEVAQVTVNTHPSARYRHSMTM
RRVRD

Sequences:

>Translated_245_residues
MSVTHPEHRYLQVARTLRKEIVDGVYPVGSQLPTEHELCERFAVSRFTIREALRRLREDNLVTSRPRAGTLVVPRPSGNT
YAQDVMSIDDLLAFAAGAQFTVESNATVTVDAELAERTRLALGSEWLAVTGYRQADTNSTPICRTEYYINRAFAAVGRLL
PRHTGPIFPLIEDLFGVSVVEVHQEIAAVVLPAELAHRLGVEPGSAALQMQRTYTTSDGEVAQVTVNTHPSARYRHSMTM
RRVRD
>Mature_244_residues
SVTHPEHRYLQVARTLRKEIVDGVYPVGSQLPTEHELCERFAVSRFTIREALRRLREDNLVTSRPRAGTLVVPRPSGNTY
AQDVMSIDDLLAFAAGAQFTVESNATVTVDAELAERTRLALGSEWLAVTGYRQADTNSTPICRTEYYINRAFAAVGRLLP
RHTGPIFPLIEDLFGVSVVEVHQEIAAVVLPAELAHRLGVEPGSAALQMQRTYTTSDGEVAQVTVNTHPSARYRHSMTMR
RVRD

Specific function: Repressor For The Dgorkat Operon. Binds D-Galactonate As An Inducer. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27269; Mature: 27138

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTHPEHRYLQVARTLRKEIVDGVYPVGSQLPTEHELCERFAVSRFTIREALRRLREDN
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LVTSRPRAGTLVVPRPSGNTYAQDVMSIDDLLAFAAGAQFTVESNATVTVDAELAERTRL
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEHHHHHHHHH
ALGSEWLAVTGYRQADTNSTPICRTEYYINRAFAAVGRLLPRHTGPIFPLIEDLFGVSVV
HHCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH
EVHQEIAAVVLPAELAHRLGVEPGSAALQMQRTYTTSDGEVAQVTVNTHPSARYRHSMTM
HHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHEEECCCCCEEEEEEECCCCHHHHHHHHH
RRVRD
HHHCC
>Mature Secondary Structure 
SVTHPEHRYLQVARTLRKEIVDGVYPVGSQLPTEHELCERFAVSRFTIREALRRLREDN
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
LVTSRPRAGTLVVPRPSGNTYAQDVMSIDDLLAFAAGAQFTVESNATVTVDAELAERTRL
CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEHHHHHHHHH
ALGSEWLAVTGYRQADTNSTPICRTEYYINRAFAAVGRLLPRHTGPIFPLIEDLFGVSVV
HHCCCEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHH
EVHQEIAAVVLPAELAHRLGVEPGSAALQMQRTYTTSDGEVAQVTVNTHPSARYRHSMTM
HHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEHEEECCCCCEEEEEEECCCCHHHHHHHHH
RRVRD
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]