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The map label for this gene is sigK [H]

Identifier: 119870487

GI number: 119870487

Start: 4691108

End: 4691689

Strand: Direct

Name: sigK [H]

Synonym: Mkms_4458

Alternate gene names: 119870487

Gene position: 4691108-4691689 (Clockwise)

Preceding gene: 119870486

Following gene: 119870488

Centisome position: 81.77

GC content: 66.84

Gene sequence:

>582_bases
ATGACCGCCCTGACCCAGCCGGTTAGGCTACCGTTCGTGACCACTGACCTCGACGTACTGTTACGGCAGGTGGCCGAGCG
GGATGTCGATGCGTTCGCGGCCCTCTACGACCGGACCCGGTCGCGGGTGTACGGGATGGTCACCCGGGTGCTGCGGGATC
CGGGCTACAGCGAAGAGACCACTCAGGACATCTACCTGCAGGTGTGGCGGTCGGCCGGCAGCTACGACCCCAAGGCCGGG
TCGCCGATGGCGTGGCTGCTGACGTTGGCGCACCGTCGCGCCGTCGACCGGGTGCGTTCGGAGGAGGCCGCCTCGCAGCG
GGAGTCCCGGTACGGCGCCGCGAGCGTCGACCCGCCCGTCGACCACGTCGCCGACTCGGTGATCCTGCTCGACGAACGCC
GTCGCGTCGTCGACTGCATGGGATCGCTGTCGGATCTGCAACGCGAAGCGATCCAGCTGGCGTATTACGAGGGACTGACG
TATGTCCAGGTCTCCGAGCGTCTGTCGGCGAATCTGGCCACAATCAAATCGCGGATGCGCGGCGGCATCCGCGGTCTCAA
GAACTGTCTGGGCATGTCATGA

Upstream 100 bases:

>100_bases
ACCGCCACCGTGGCGCACTCGGGAGCAAAGGCGTGACGACGCACGGAACGGGTTCGGGGACAATCTGTTCGGGCCACCGG
GTCCGGGGACGGCCATATCG

Downstream 100 bases:

>100_bases
CCGAGCCGAACAACACCGATCTCCTCGACCTCGCGACGCCGTATGCGCTGCATGCGGTGTCCATCGACGAGCGCTTCGAG
ATCGACCGGTGGCTGGCCAC

Product: RNA polymerase sigma factor SigK

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTALTQPVRLPFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWRSAGSYDPKAG
SPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILLDERRRVVDCMGSLSDLQREAIQLAYYEGLT
YVQVSERLSANLATIKSRMRGGIRGLKNCLGMS

Sequences:

>Translated_193_residues
MTALTQPVRLPFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWRSAGSYDPKAG
SPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILLDERRRVVDCMGSLSDLQREAIQLAYYEGLT
YVQVSERLSANLATIKSRMRGGIRGLKNCLGMS
>Mature_192_residues
TALTQPVRLPFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWRSAGSYDPKAGS
PMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILLDERRRVVDCMGSLSDLQREAIQLAYYEGLTY
VQVSERLSANLATIKSRMRGGIRGLKNCLGMS

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 21658; Mature: 21527

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALTQPVRLPFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEET
CCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TQDIYLQVWRSAGSYDPKAGSPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPV
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DHVADSVILLDERRRVVDCMGSLSDLQREAIQLAYYEGLTYVQVSERLSANLATIKSRMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GGIRGLKNCLGMS
HHHHHHHHHHCCC
>Mature Secondary Structure 
TALTQPVRLPFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEET
CCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TQDIYLQVWRSAGSYDPKAGSPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPV
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DHVADSVILLDERRRVVDCMGSLSDLQREAIQLAYYEGLTYVQVSERLSANLATIKSRMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GGIRGLKNCLGMS
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA