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The map label for this gene is ycdM [C]

Identifier: 119870439

GI number: 119870439

Start: 4636532

End: 4637380

Strand: Direct

Name: ycdM [C]

Synonym: Mkms_4410

Alternate gene names: 119870439

Gene position: 4636532-4637380 (Clockwise)

Preceding gene: 119870433

Following gene: 119870443

Centisome position: 80.81

GC content: 69.49

Gene sequence:

>849_bases
ATGGACTTCGGGCTCGTACTCTTCACCAGTGACCGCGGTATCGCCCCGGCCACGGCCGCCAAGCTGGCCGACGACCACGG
CTTCCGCACCTTCTACGTGCCCGAGCACACCCACATCCCGATCAAGCGCGAGGCCGCCCACCCGACGACGGGTGACGAGA
CCCTGCCCGACGACCGCTACATGCGCACCCTCGACCCGTGGGTGTCGCTGGGCACGGCGTGTGCGGTGACCTCGCGGGTG
CGACTGTCGACGGCGGTGGCGCTGCCCGTCGAGCACGACCCGATCACGCTGGCGAAGTCGATCGCCACGCTCGACCACCT
GTCCGGTGGCCGGGTCAGCCTCGGTGTCGGATTCGGTTGGAACACAGACGAATTGGCCGACCACAACGTCCCGCCCGGCC
GCCGTCGCACGATGCTGCGCGAATACCTCGAGGCGATGCGGGCGCTGTGGACCCAGGAGGAGGCGTCCTACGAGGGCGAG
TTCGTGAACTTCGGGCCGAGCTGGGCGTGGCCGAAGCCGGTGCAGGCCCACATCCCGGTGCTGGTCGGCGCGGCCGGCAC
GGAGAAGAACTTCAAGTGGATCGCGAAGTCCGCCGACGGCTGGATCACCACACCGCGCGACTTCGACATCGACGCCCCGG
TCAAGCTGCTGCAGGACACCTGGGCCGGCGCCGGTCGCGACGGCGCACCCCAGATCGTCGCCCTGGACTTCAAGCCGGAT
CCGGACAAGCTGGCGCGCTGGCGTGAGCTCGGGGTGACCGAGGTGCTGTTCGGACTGCCGGACAAGAGCGAGGCCGAGGT
CGCGGCGTACGTCGAGCGGTTGGCAGGCAAGCTCTCCGCGCTGGTGTGA

Upstream 100 bases:

>100_bases
GGATCCATGGCAGCAACCGCCGCGACCGCCGTCACCCATATGGATCGCGGTGAACTTATCCGTGCTTGCCCTTCTTACTA
GAACACGTTCTAATTCCTGC

Downstream 100 bases:

>100_bases
GTTGCGCCGAAACTGCTCAGAGATCGCGTTCGCGGCGCCGGACGTGATCTGGCAGCAGTCTCGGCGCGCGGTTACGCCGA
CGTCGCGCGGTTCTTGTCCC

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MDFGLVLFTSDRGIAPATAAKLADDHGFRTFYVPEHTHIPIKREAAHPTTGDETLPDDRYMRTLDPWVSLGTACAVTSRV
RLSTAVALPVEHDPITLAKSIATLDHLSGGRVSLGVGFGWNTDELADHNVPPGRRRTMLREYLEAMRALWTQEEASYEGE
FVNFGPSWAWPKPVQAHIPVLVGAAGTEKNFKWIAKSADGWITTPRDFDIDAPVKLLQDTWAGAGRDGAPQIVALDFKPD
PDKLARWRELGVTEVLFGLPDKSEAEVAAYVERLAGKLSALV

Sequences:

>Translated_282_residues
MDFGLVLFTSDRGIAPATAAKLADDHGFRTFYVPEHTHIPIKREAAHPTTGDETLPDDRYMRTLDPWVSLGTACAVTSRV
RLSTAVALPVEHDPITLAKSIATLDHLSGGRVSLGVGFGWNTDELADHNVPPGRRRTMLREYLEAMRALWTQEEASYEGE
FVNFGPSWAWPKPVQAHIPVLVGAAGTEKNFKWIAKSADGWITTPRDFDIDAPVKLLQDTWAGAGRDGAPQIVALDFKPD
PDKLARWRELGVTEVLFGLPDKSEAEVAAYVERLAGKLSALV
>Mature_282_residues
MDFGLVLFTSDRGIAPATAAKLADDHGFRTFYVPEHTHIPIKREAAHPTTGDETLPDDRYMRTLDPWVSLGTACAVTSRV
RLSTAVALPVEHDPITLAKSIATLDHLSGGRVSLGVGFGWNTDELADHNVPPGRRRTMLREYLEAMRALWTQEEASYEGE
FVNFGPSWAWPKPVQAHIPVLVGAAGTEKNFKWIAKSADGWITTPRDFDIDAPVKLLQDTWAGAGRDGAPQIVALDFKPD
PDKLARWRELGVTEVLFGLPDKSEAEVAAYVERLAGKLSALV

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=197, Percent_Identity=26.3959390862944, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 30950; Mature: 30950

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFGLVLFTSDRGIAPATAAKLADDHGFRTFYVPEHTHIPIKREAAHPTTGDETLPDDRY
CCCEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
MRTLDPWVSLGTACAVTSRVRLSTAVALPVEHDPITLAKSIATLDHLSGGRVSLGVGFGW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
NTDELADHNVPPGRRRTMLREYLEAMRALWTQEEASYEGEFVNFGPSWAWPKPVQAHIPV
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCE
LVGAAGTEKNFKWIAKSADGWITTPRDFDIDAPVKLLQDTWAGAGRDGAPQIVALDFKPD
EEECCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCC
PDKLARWRELGVTEVLFGLPDKSEAEVAAYVERLAGKLSALV
HHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDFGLVLFTSDRGIAPATAAKLADDHGFRTFYVPEHTHIPIKREAAHPTTGDETLPDDRY
CCCEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
MRTLDPWVSLGTACAVTSRVRLSTAVALPVEHDPITLAKSIATLDHLSGGRVSLGVGFGW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
NTDELADHNVPPGRRRTMLREYLEAMRALWTQEEASYEGEFVNFGPSWAWPKPVQAHIPV
CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCE
LVGAAGTEKNFKWIAKSADGWITTPRDFDIDAPVKLLQDTWAGAGRDGAPQIVALDFKPD
EEECCCCCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCC
PDKLARWRELGVTEVLFGLPDKSEAEVAAYVERLAGKLSALV
HHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]