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The map label for this gene is ycdO [H]

Identifier: 119870357

GI number: 119870357

Start: 4543710

End: 4544639

Strand: Direct

Name: ycdO [H]

Synonym: Mkms_4328

Alternate gene names: 119870357

Gene position: 4543710-4544639 (Clockwise)

Preceding gene: 119870351

Following gene: 119870358

Centisome position: 79.2

GC content: 69.14

Gene sequence:

>930_bases
ATGGGACGGCATATCGCCTGGCAGGTACCGGTGGTGGCATTGGCTGTGGTTCTGGCCGGCTGTTCGAGCAACGGCGAGGG
CGGCGATTCCGAGACGTCGTCGACGACTTCGGGGACCTCGGAGTCCTCCGCGGCCGCCGCGGCGCCCAGCCCCGAGGCCC
AGAAGGCGGCCACCGAATACAAGGCGTACGCGATCGCCCAGGCCGACGAGCTCGTCGGCGCCGTCAAGACGCTGACCGAC
GCGGTGCGGGCGAACAACCTGCAGGCCGCCCAGGACGCCTTCGCCCCCTCGCGCCTGCCCTGGGAGCGCATCGAGCCACT
GGCCGGCCTCGTCGAGGAGATCGACGGCAAGGTCGACGCCCGCGTCGACGACTTCGCCGGCGTCGACGACCCGGCGTTCA
CCGGCTGGCACCGCCTCGAGTACCTGCTGTTCTCGCAGAACACCACCGAGGGCGGTGCGCAGTTCGCCGATCAGCTCGAC
GCCGACGTCGCGACGCTGCAGAAGCAGCTGCCGACGGTCGACGTGACGCCGGTCGACGTGTCGACCGGGGCGGCCGAACT
CATCGAAGAGGTGTCGGAAGGCAAGATCACCGGCGAGGAGGACCGCTACTCCAAGACCGACCTGTGGGATTTCGAGGCCA
ACCTGCAGGGTTCTGAGGCCGCGGTGAACCGTCTCTCGCCCGCGCTCGTGAAGGCCGATCCCGCGCTGCTGGGCAAGATC
GAGGCCGGGTTCTCGGAGATCTTCGCGACCCTGGGCCCGCTGCGCCGCGGCGACGGCTTCGTGCTGTTCTGCACCGAGAA
CGACCCGTACCCGTCAGCGCGCTGCCCCGAGGTGACCGTCGACCCCGCGACGATCGACAAGATGAAGGCGCAGTTGGCCG
GTCTGTCCGAGAACCTCTCCCAGGTGTCGGGAGCGTTGAAGCTGACGTGA

Upstream 100 bases:

>100_bases
TGCGACCGTCGCCTCGGACGCCCCGGGGCGAATTTTTAGGTATGCCTACCCTGTCGGTCGGGCTGCAGGGTAATGTTCGG
CTCCGATCAAGGGAGGTCCG

Downstream 100 bases:

>100_bases
CCGGAGGTTCGCGGCGTACAGGTCTTTCGCGCCGGACGTTCTTCGCCGGCGCGCTGGGCACCGGCGCCGCGGTCGGCGTC
GGTGCGGCGCTGTCCGGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 308

Protein sequence:

>309_residues
MGRHIAWQVPVVALAVVLAGCSSNGEGGDSETSSTTSGTSESSAAAAAPSPEAQKAATEYKAYAIAQADELVGAVKTLTD
AVRANNLQAAQDAFAPSRLPWERIEPLAGLVEEIDGKVDARVDDFAGVDDPAFTGWHRLEYLLFSQNTTEGGAQFADQLD
ADVATLQKQLPTVDVTPVDVSTGAAELIEEVSEGKITGEEDRYSKTDLWDFEANLQGSEAAVNRLSPALVKADPALLGKI
EAGFSEIFATLGPLRRGDGFVLFCTENDPYPSARCPEVTVDPATIDKMKAQLAGLSENLSQVSGALKLT

Sequences:

>Translated_309_residues
MGRHIAWQVPVVALAVVLAGCSSNGEGGDSETSSTTSGTSESSAAAAAPSPEAQKAATEYKAYAIAQADELVGAVKTLTD
AVRANNLQAAQDAFAPSRLPWERIEPLAGLVEEIDGKVDARVDDFAGVDDPAFTGWHRLEYLLFSQNTTEGGAQFADQLD
ADVATLQKQLPTVDVTPVDVSTGAAELIEEVSEGKITGEEDRYSKTDLWDFEANLQGSEAAVNRLSPALVKADPALLGKI
EAGFSEIFATLGPLRRGDGFVLFCTENDPYPSARCPEVTVDPATIDKMKAQLAGLSENLSQVSGALKLT
>Mature_308_residues
GRHIAWQVPVVALAVVLAGCSSNGEGGDSETSSTTSGTSESSAAAAAPSPEAQKAATEYKAYAIAQADELVGAVKTLTDA
VRANNLQAAQDAFAPSRLPWERIEPLAGLVEEIDGKVDARVDDFAGVDDPAFTGWHRLEYLLFSQNTTEGGAQFADQLDA
DVATLQKQLPTVDVTPVDVSTGAAELIEEVSEGKITGEEDRYSKTDLWDFEANLQGSEAAVNRLSPALVKADPALLGKIE
AGFSEIFATLGPLRRGDGFVLFCTENDPYPSARCPEVTVDPATIDKMKAQLAGLSENLSQVSGALKLT

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=254, Percent_Identity=44.0944881889764, Blast_Score=209, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 32517; Mature: 32386

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRHIAWQVPVVALAVVLAGCSSNGEGGDSETSSTTSGTSESSAAAAAPSPEAQKAATEY
CCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KAYAIAQADELVGAVKTLTDAVRANNLQAAQDAFAPSRLPWERIEPLAGLVEEIDGKVDA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
RVDDFAGVDDPAFTGWHRLEYLLFSQNTTEGGAQFADQLDADVATLQKQLPTVDVTPVDV
CHHHHCCCCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
STGAAELIEEVSEGKITGEEDRYSKTDLWDFEANLQGSEAAVNRLSPALVKADPALLGKI
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCCHHHHHCCHHHHHHH
EAGFSEIFATLGPLRRGDGFVLFCTENDPYPSARCPEVTVDPATIDKMKAQLAGLSENLS
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHH
QVSGALKLT
HHHCCCCCC
>Mature Secondary Structure 
GRHIAWQVPVVALAVVLAGCSSNGEGGDSETSSTTSGTSESSAAAAAPSPEAQKAATEY
CCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
KAYAIAQADELVGAVKTLTDAVRANNLQAAQDAFAPSRLPWERIEPLAGLVEEIDGKVDA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC
RVDDFAGVDDPAFTGWHRLEYLLFSQNTTEGGAQFADQLDADVATLQKQLPTVDVTPVDV
CHHHHCCCCCCCCCHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
STGAAELIEEVSEGKITGEEDRYSKTDLWDFEANLQGSEAAVNRLSPALVKADPALLGKI
CCCHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHCCHHHHHCCHHHHHHH
EAGFSEIFATLGPLRRGDGFVLFCTENDPYPSARCPEVTVDPATIDKMKAQLAGLSENLS
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHH
QVSGALKLT
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]