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The map label for this gene is ycdB [H]

Identifier: 119870358

GI number: 119870358

Start: 4544636

End: 4545895

Strand: Direct

Name: ycdB [H]

Synonym: Mkms_4329

Alternate gene names: 119870358

Gene position: 4544636-4545895 (Clockwise)

Preceding gene: 119870357

Following gene: 119870361

Centisome position: 79.21

GC content: 69.37

Gene sequence:

>1260_bases
GTGACCGGAGGTTCGCGGCGTACAGGTCTTTCGCGCCGGACGTTCTTCGCCGGCGCGCTGGGCACCGGCGCCGCGGTCGG
CGTCGGTGCGGCGCTGTCCGGATGTTCGGACGCACGGCCTGCTGCGCCGGTGTCCGGAGCGCGTTTCGTCCCGTTCGACG
GCCCGCACCAGACCGGCATCACGTCGGTGCCGATCCCCGAGCAGGGGCTGATCGCCTCCTTCAACGTGTTGTCGAAGGAC
CGGGCCGGGCTGGCGGCGACGCTCGCCGAATTGACCGACGAGATCCGGGGCCTGATGGCGGGCAGACCGCCCGAGGTGCG
TGACCCCGCCTATCCCCCGGTGGACTCCGGGATCCTCGGGGAGAAACCGCCGCCGGACAACCTGTCGGTGGTCGTCGGTG
TCGGCGCATCGCTGTTCGACGACCGGTTCGGTCTGGCCGACCGCAAACCCCGCGAACTCGAGACGATGCCGTTCCTGGCG
AACGACCGGTTGGATCCCAAGCTCTCACACGGGGACGTCTCGATCATCCTGGAGGCCGGCCACACCGACACCGTGCAGTT
CGCGCTGCGACAGCTGATGCGCCGCACCCGCAGCCACCTGGTCCTGCGCTGGATGGTCGACGGCTACGCCCGCGGTATCG
GCGCCGGGCCGGCGTCGGAGGCGGCGACACCGCGAAACCTGTTGGGATTCAAGGACGGGACGTCGAACCTCGACCCGGAG
GACGACGCGCTGATGGACCGGCACGTGTGGGTGGGGCCCGACGACGGCGAACCGGACTGGGCGGTCGGCGGCTCGTATCA
GGCCGTCCGCATCATCCGCATGTTCGTCGAGTTCTGGGACCGCACCCGACTCGCCGAACAGGAGGCGATCTTCGGGCGGC
GCAAGGTCAGCGGCGCACCGATCGGGATGACCGACGAGTTCGCCGACCCGGACTACGCCGAAGACCCGGACGGTAAGCGC
ATCAAACTCGACGCGCACATCCGGCTGGCGAACCCCCGCACGGCCGAGACCGAGCAGAATCTCATTCTGCGGCGCGGCTT
TTCATACTCACGGGGTTTCGACGGCGCCGGCCGCCTCGACCAGGGGTTGGCGTTCGTGTCCTACCAGCGCAGCCTCGAGA
AGGGCTTCCTGACCGTCCAGCGGCGACTCAAGGGCGAACCGCTCGAGGAGTACATCCTGCCCGTCGGGGGCGGGTTCTTC
TTCATGCTGCCCGGCGTGACCGGCGAGGACCGCTTCCTCGGCGACCGACTGGTCGACTGA

Upstream 100 bases:

>100_bases
CCGAGGTGACCGTCGACCCCGCGACGATCGACAAGATGAAGGCGCAGTTGGCCGGTCTGTCCGAGAACCTCTCCCAGGTG
TCGGGAGCGTTGAAGCTGAC

Downstream 100 bases:

>100_bases
GTCACACGCGCACCAATCTCCAGGTGGTGTGTCCCTTCGAGATTCGATATCGCCCGCGCTATCAGCTAGCACCGGCGATA
TCGCATTCGGGACTCACACA

Product: Dyp-type peroxidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTGGSRRTGLSRRTFFAGALGTGAAVGVGAALSGCSDARPAAPVSGARFVPFDGPHQTGITSVPIPEQGLIASFNVLSKD
RAGLAATLAELTDEIRGLMAGRPPEVRDPAYPPVDSGILGEKPPPDNLSVVVGVGASLFDDRFGLADRKPRELETMPFLA
NDRLDPKLSHGDVSIILEAGHTDTVQFALRQLMRRTRSHLVLRWMVDGYARGIGAGPASEAATPRNLLGFKDGTSNLDPE
DDALMDRHVWVGPDDGEPDWAVGGSYQAVRIIRMFVEFWDRTRLAEQEAIFGRRKVSGAPIGMTDEFADPDYAEDPDGKR
IKLDAHIRLANPRTAETEQNLILRRGFSYSRGFDGAGRLDQGLAFVSYQRSLEKGFLTVQRRLKGEPLEEYILPVGGGFF
FMLPGVTGEDRFLGDRLVD

Sequences:

>Translated_419_residues
MTGGSRRTGLSRRTFFAGALGTGAAVGVGAALSGCSDARPAAPVSGARFVPFDGPHQTGITSVPIPEQGLIASFNVLSKD
RAGLAATLAELTDEIRGLMAGRPPEVRDPAYPPVDSGILGEKPPPDNLSVVVGVGASLFDDRFGLADRKPRELETMPFLA
NDRLDPKLSHGDVSIILEAGHTDTVQFALRQLMRRTRSHLVLRWMVDGYARGIGAGPASEAATPRNLLGFKDGTSNLDPE
DDALMDRHVWVGPDDGEPDWAVGGSYQAVRIIRMFVEFWDRTRLAEQEAIFGRRKVSGAPIGMTDEFADPDYAEDPDGKR
IKLDAHIRLANPRTAETEQNLILRRGFSYSRGFDGAGRLDQGLAFVSYQRSLEKGFLTVQRRLKGEPLEEYILPVGGGFF
FMLPGVTGEDRFLGDRLVD
>Mature_418_residues
TGGSRRTGLSRRTFFAGALGTGAAVGVGAALSGCSDARPAAPVSGARFVPFDGPHQTGITSVPIPEQGLIASFNVLSKDR
AGLAATLAELTDEIRGLMAGRPPEVRDPAYPPVDSGILGEKPPPDNLSVVVGVGASLFDDRFGLADRKPRELETMPFLAN
DRLDPKLSHGDVSIILEAGHTDTVQFALRQLMRRTRSHLVLRWMVDGYARGIGAGPASEAATPRNLLGFKDGTSNLDPED
DALMDRHVWVGPDDGEPDWAVGGSYQAVRIIRMFVEFWDRTRLAEQEAIFGRRKVSGAPIGMTDEFADPDYAEDPDGKRI
KLDAHIRLANPRTAETEQNLILRRGFSYSRGFDGAGRLDQGLAFVSYQRSLEKGFLTVQRRLKGEPLEEYILPVGGGFFF
MLPGVTGEDRFLGDRLVD

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=413, Percent_Identity=49.1525423728814, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 45434; Mature: 45303

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGGSRRTGLSRRTFFAGALGTGAAVGVGAALSGCSDARPAAPVSGARFVPFDGPHQTGI
CCCCCCCCCCCHHHEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
TSVPIPEQGLIASFNVLSKDRAGLAATLAELTDEIRGLMAGRPPEVRDPAYPPVDSGILG
CCCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
EKPPPDNLSVVVGVGASLFDDRFGLADRKPRELETMPFLANDRLDPKLSHGDVSIILEAG
CCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEECC
HTDTVQFALRQLMRRTRSHLVLRWMVDGYARGIGAGPASEAATPRNLLGFKDGTSNLDPE
CCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
DDALMDRHVWVGPDDGEPDWAVGGSYQAVRIIRMFVEFWDRTRLAEQEAIFGRRKVSGAP
CHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IGMTDEFADPDYAEDPDGKRIKLDAHIRLANPRTAETEQNLILRRGFSYSRGFDGAGRLD
CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHH
QGLAFVSYQRSLEKGFLTVQRRLKGEPLEEYILPVGGGFFFMLPGVTGEDRFLGDRLVD
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCEEEEECCCCCCCHHCHHHCCC
>Mature Secondary Structure 
TGGSRRTGLSRRTFFAGALGTGAAVGVGAALSGCSDARPAAPVSGARFVPFDGPHQTGI
CCCCCCCCCCHHHEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCC
TSVPIPEQGLIASFNVLSKDRAGLAATLAELTDEIRGLMAGRPPEVRDPAYPPVDSGILG
CCCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
EKPPPDNLSVVVGVGASLFDDRFGLADRKPRELETMPFLANDRLDPKLSHGDVSIILEAG
CCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEEECC
HTDTVQFALRQLMRRTRSHLVLRWMVDGYARGIGAGPASEAATPRNLLGFKDGTSNLDPE
CCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
DDALMDRHVWVGPDDGEPDWAVGGSYQAVRIIRMFVEFWDRTRLAEQEAIFGRRKVSGAP
CHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IGMTDEFADPDYAEDPDGKRIKLDAHIRLANPRTAETEQNLILRRGFSYSRGFDGAGRLD
CCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCHH
QGLAFVSYQRSLEKGFLTVQRRLKGEPLEEYILPVGGGFFFMLPGVTGEDRFLGDRLVD
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCEEEEECCCCCCCHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]