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The map label for this gene is yqfA [C]

Identifier: 119870243

GI number: 119870243

Start: 4440708

End: 4441451

Strand: Direct

Name: yqfA [C]

Synonym: Mkms_4213

Alternate gene names: 119870243

Gene position: 4440708-4441451 (Clockwise)

Preceding gene: 119870238

Following gene: 119870248

Centisome position: 77.4

GC content: 68.01

Gene sequence:

>744_bases
ATGACGACCCCGTCCACACCGATCGACGCCGACGAGCCGCGTTCGCCGGCCGATCCGGAGGACTTCCCCGAGGCAGTCGC
CGAACGGGTAGCCCAGTTCATCGGCAAGCCGCGGGCCCGCGGCTGGATCCACGTCTACTCCGCCGTCGTCGCGGTGATCT
GCGGGGCGACGCTGGTGTCGGTGTCGTGGGCGGTCGTGTCCACCCGCGCGGGGATCGCGACGCTGATCTACACGCTCACG
ATCGTGGCGATGTTCGCCGTCAGCGGGACCTATCACCGGGTGAACTGGCGTTCCCCGGTGGCGCGCAAGTGGATGAAACG
CGCCGACCACTCGATGATCTTCATCTTCATCGCGGGCAGTTACACACCGTTCGCCCTGCTGGCCCTGCCCGAGGGCAAGG
GCATGGTGCTGTTCTGGATCGTGTGGGGCGGTGCGCTCGCCGGAGTGCTGCTCAAGATGTTCTGGCCGTCGGCCCCGGCG
TGGGTCGGGGTGCCGCTGTACCTGTTGCTCGGCTGGGTGGCGGCCTGGTTCATCGGCCCGATCATGGACGGCGCGGGGGT
CTCCGCGGTGGTGCTGCTGATCGTCGGCGGCGCGCTCTACAGCATCGGCGGGGTGCTCTACGGGCTGAAGTGGCCCAATC
CGTGGCCGACGACCTTCGGCCATCACGAGTTCTTCCACGCGTGCACCGCCGTCGCGGCGATCTGCCACTACATCGCGATG
TGGTTCGCGGTCTTCTCGAGCTAG

Upstream 100 bases:

>100_bases
GAGCCGGTATGCAGGCTCCTTGAGACCGCGGGGAATGATGTCCATGAGTATTCAGACTACTGTGGCGGCCGAGTGCCCCA
ACCGAGTTGACGGAGGTGAC

Downstream 100 bases:

>100_bases
GCGATTTCGGCGTGCGCGGTCGCGCCCAGCGCGACCCAGCACGCCGAAATCACAGCTGGGTGATGTCGTCCGGACCCCAG
TAGGCCTTCATCGAGGCGAT

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 246

Protein sequence:

>247_residues
MTTPSTPIDADEPRSPADPEDFPEAVAERVAQFIGKPRARGWIHVYSAVVAVICGATLVSVSWAVVSTRAGIATLIYTLT
IVAMFAVSGTYHRVNWRSPVARKWMKRADHSMIFIFIAGSYTPFALLALPEGKGMVLFWIVWGGALAGVLLKMFWPSAPA
WVGVPLYLLLGWVAAWFIGPIMDGAGVSAVVLLIVGGALYSIGGVLYGLKWPNPWPTTFGHHEFFHACTAVAAICHYIAM
WFAVFSS

Sequences:

>Translated_247_residues
MTTPSTPIDADEPRSPADPEDFPEAVAERVAQFIGKPRARGWIHVYSAVVAVICGATLVSVSWAVVSTRAGIATLIYTLT
IVAMFAVSGTYHRVNWRSPVARKWMKRADHSMIFIFIAGSYTPFALLALPEGKGMVLFWIVWGGALAGVLLKMFWPSAPA
WVGVPLYLLLGWVAAWFIGPIMDGAGVSAVVLLIVGGALYSIGGVLYGLKWPNPWPTTFGHHEFFHACTAVAAICHYIAM
WFAVFSS
>Mature_246_residues
TTPSTPIDADEPRSPADPEDFPEAVAERVAQFIGKPRARGWIHVYSAVVAVICGATLVSVSWAVVSTRAGIATLIYTLTI
VAMFAVSGTYHRVNWRSPVARKWMKRADHSMIFIFIAGSYTPFALLALPEGKGMVLFWIVWGGALAGVLLKMFWPSAPAW
VGVPLYLLLGWVAAWFIGPIMDGAGVSAVVLLIVGGALYSIGGVLYGLKWPNPWPTTFGHHEFFHACTAVAAICHYIAMW
FAVFSS

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=171, Percent_Identity=29.2397660818713, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 26814; Mature: 26683

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPSTPIDADEPRSPADPEDFPEAVAERVAQFIGKPRARGWIHVYSAVVAVICGATLVS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VSWAVVSTRAGIATLIYTLTIVAMFAVSGTYHRVNWRSPVARKWMKRADHSMIFIFIAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCEEEEEEECC
YTPFALLALPEGKGMVLFWIVWGGALAGVLLKMFWPSAPAWVGVPLYLLLGWVAAWFIGP
CCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IMDGAGVSAVVLLIVGGALYSIGGVLYGLKWPNPWPTTFGHHEFFHACTAVAAICHYIAM
HCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
WFAVFSS
HHHHHCC
>Mature Secondary Structure 
TTPSTPIDADEPRSPADPEDFPEAVAERVAQFIGKPRARGWIHVYSAVVAVICGATLVS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VSWAVVSTRAGIATLIYTLTIVAMFAVSGTYHRVNWRSPVARKWMKRADHSMIFIFIAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCEEEEEEECC
YTPFALLALPEGKGMVLFWIVWGGALAGVLLKMFWPSAPAWVGVPLYLLLGWVAAWFIGP
CCCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IMDGAGVSAVVLLIVGGALYSIGGVLYGLKWPNPWPTTFGHHEFFHACTAVAAICHYIAM
HCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
WFAVFSS
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]