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The map label for this gene is oppC [C]

Identifier: 119870033

GI number: 119870033

Start: 4219560

End: 4220483

Strand: Direct

Name: oppC [C]

Synonym: Mkms_4003

Alternate gene names: 119870033

Gene position: 4219560-4220483 (Clockwise)

Preceding gene: 119870032

Following gene: 119870034

Centisome position: 73.55

GC content: 66.77

Gene sequence:

>924_bases
ATGATGAGCGATTCGACGAGTACGACGGCGCGCTCGGGGCTGGACACCTCGCGGTTCGCCTCGCGCCGGACGCTGGTGAC
GCGACGGTTCCTGCGCAACAAACCGGCGGTGGGCGCGCTCGCGCTGCTGGTGCTGATGTTCGCCGGCTGCTATCTGTTGC
CGCCGCTGCTGCCCTACAGCTACACCGATCTCGACTACTACGCGCTGCAGCAGCCGCCGACCACCGAGCACTGGTTCGGC
ACCAACGCGCTCGGCCAGGACCTGCTGGCCCAGACGCTGCGCGGTATGCAGAAATCGATGCTCATCGGCGTCGCGGTGGC
GTTCATCTCGACGATCATCGCGGCCACCGTCGGCTCCATCGCCGGCTACTTCGGCGGATGGCGCGACCGCACGCTGATGT
GGCTGGTTGACCTGCTGCTGGTGGTGCCCAGCTTCATCCTCATCGCGATCGTGACACCGCGGACCAAGGAGTCCGGCACC
ATCCTGTGGCTGATCCTGCTGCTGGCGGCGTTCAGTTGGATGATCAGTTCCCGCATCGTGCGGGGTCTGACGATGAGCCT
GCGCGACCGCGAATTCGTCGTCGCCGCCCGCTACATGGGGGTGCCGCACTGGCGGATCATCGTGCGCCACATCGTGCCCA
ACGTCGCGTCGATCCTCATCATCGACACCGCGCTCAACGTCGGGTTGGCGGTGCTCGCCGAAACCGGGCTCAGCTTCCTG
GGTTTCGGGGTGCAGCGACCCGACGTCTCACTCGGCACGCTGATCGCCGACGGCACCGGTTCGGTCACCACCTTCCCATG
GGTGTTTCTGTTCCCCGCCGGGGTGCTGGTGCTGATCATCCTGTGCGCCAACCTCATCGGCGACGGCCTGCGCGACGCAC
TCGACCCGGGGATCCGCCCGGCCCGGAAAGGGCGGAAGACATGA

Upstream 100 bases:

>100_bases
TCGCGGCGATCACGGTGTTCTCCGGCGCCATGATCCTGTTGGCCGGGTTGCTGTCCGACGTGATCTACGCGGCGCTGGAC
CCGAGAGTGCGGGTGCAGTG

Downstream 100 bases:

>100_bases
GCCTGCTCGAGGTCTCCGGGTTGACGGTGACGTTCGCGACCGACACCGAGCGGGTGGCCGCGGTGCGCGGCCTGGACTAC
CGCCTCGACGCCGGTGAGGT

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MMSDSTSTTARSGLDTSRFASRRTLVTRRFLRNKPAVGALALLVLMFAGCYLLPPLLPYSYTDLDYYALQQPPTTEHWFG
TNALGQDLLAQTLRGMQKSMLIGVAVAFISTIIAATVGSIAGYFGGWRDRTLMWLVDLLLVVPSFILIAIVTPRTKESGT
ILWLILLLAAFSWMISSRIVRGLTMSLRDREFVVAARYMGVPHWRIIVRHIVPNVASILIIDTALNVGLAVLAETGLSFL
GFGVQRPDVSLGTLIADGTGSVTTFPWVFLFPAGVLVLIILCANLIGDGLRDALDPGIRPARKGRKT

Sequences:

>Translated_307_residues
MMSDSTSTTARSGLDTSRFASRRTLVTRRFLRNKPAVGALALLVLMFAGCYLLPPLLPYSYTDLDYYALQQPPTTEHWFG
TNALGQDLLAQTLRGMQKSMLIGVAVAFISTIIAATVGSIAGYFGGWRDRTLMWLVDLLLVVPSFILIAIVTPRTKESGT
ILWLILLLAAFSWMISSRIVRGLTMSLRDREFVVAARYMGVPHWRIIVRHIVPNVASILIIDTALNVGLAVLAETGLSFL
GFGVQRPDVSLGTLIADGTGSVTTFPWVFLFPAGVLVLIILCANLIGDGLRDALDPGIRPARKGRKT
>Mature_307_residues
MMSDSTSTTARSGLDTSRFASRRTLVTRRFLRNKPAVGALALLVLMFAGCYLLPPLLPYSYTDLDYYALQQPPTTEHWFG
TNALGQDLLAQTLRGMQKSMLIGVAVAFISTIIAATVGSIAGYFGGWRDRTLMWLVDLLLVVPSFILIAIVTPRTKESGT
ILWLILLLAAFSWMISSRIVRGLTMSLRDREFVVAARYMGVPHWRIIVRHIVPNVASILIIDTALNVGLAVLAETGLSFL
GFGVQRPDVSLGTLIADGTGSVTTFPWVFLFPAGVLVLIILCANLIGDGLRDALDPGIRPARKGRKT

Specific function: Part Of The Binding-Protein-Dependent Transport System For Oligopeptides; Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=275, Percent_Identity=41.4545454545455, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1787054, Length=273, Percent_Identity=35.5311355311355, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1787760, Length=293, Percent_Identity=31.0580204778157, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789889, Length=247, Percent_Identity=31.9838056680162, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788505, Length=233, Percent_Identity=31.7596566523605, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789964, Length=248, Percent_Identity=33.4677419354839, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787549, Length=289, Percent_Identity=27.3356401384083, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33509; Mature: 33509

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSDSTSTTARSGLDTSRFASRRTLVTRRFLRNKPAVGALALLVLMFAGCYLLPPLLPYS
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
YTDLDYYALQQPPTTEHWFGTNALGQDLLAQTLRGMQKSMLIGVAVAFISTIIAATVGSI
CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGYFGGWRDRTLMWLVDLLLVVPSFILIAIVTPRTKESGTILWLILLLAAFSWMISSRIV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RGLTMSLRDREFVVAARYMGVPHWRIIVRHIVPNVASILIIDTALNVGLAVLAETGLSFL
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFGVQRPDVSLGTLIADGTGSVTTFPWVFLFPAGVLVLIILCANLIGDGLRDALDPGIRP
HCCCCCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ARKGRKT
CCCCCCC
>Mature Secondary Structure
MMSDSTSTTARSGLDTSRFASRRTLVTRRFLRNKPAVGALALLVLMFAGCYLLPPLLPYS
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCC
YTDLDYYALQQPPTTEHWFGTNALGQDLLAQTLRGMQKSMLIGVAVAFISTIIAATVGSI
CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGYFGGWRDRTLMWLVDLLLVVPSFILIAIVTPRTKESGTILWLILLLAAFSWMISSRIV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
RGLTMSLRDREFVVAARYMGVPHWRIIVRHIVPNVASILIIDTALNVGLAVLAETGLSFL
HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFGVQRPDVSLGTLIADGTGSVTTFPWVFLFPAGVLVLIILCANLIGDGLRDALDPGIRP
HCCCCCCCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ARKGRKT
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]