Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 119869127

GI number: 119869127

Start: 3235147

End: 3236610

Strand: Direct

Name: cydA [H]

Synonym: Mkms_3095

Alternate gene names: 119869127

Gene position: 3235147-3236610 (Clockwise)

Preceding gene: 119869126

Following gene: 119869128

Centisome position: 56.39

GC content: 66.19

Gene sequence:

>1464_bases
ATGGACGCTTTGGACGTGTCACGGTGGCAGTTCGGCATCACCACCGTCTACCACTTCATCTTCGTCCCACTGACCATCGG
CCTGGCACCGATCCTGGCGGTCATGCAGACCGCGTGGGTCGTCACCGACAACCCGGCCTGGTACCGGCTCACCCGGTTCT
TCGGCAAGTTGTTCCTGATCAACTTCGCCATCGGCGTCGCCACCGGCATCGTGCAGGAGTTCCAGTTCGGGATGAACTGG
AGCGAGTACTCCCGCTTCGTCGGCGACATCTTCGGCGCGCCGCTGGCGTTCGAGGGTCTGGTCGCCTTCTTCTTCGAGTC
GACGTTCATCGGGCTGTGGATCTTCGGCTGGAGCCGGCTGCCCCGGCTGGTCCACCTGGCGTGCATCTGGATCGTCGCGA
TCGCCGTCAACGCCTCCGCGTACTTCATCATCGCGGCGAACTCGTTCATGCAGCATCCGGTCGGCGCCCGCTACAACCCC
GAGTCCGGCCGCGCCGAACTGACCGACTTCGGCGCACTGCTCACCAACAACACCGCGGTGTGGGCGTTCCAGCACGCGGT
CGCCGGGGCGCTGCTGACCGCGGGCGCCTTCGTCGCCGGTGTCTCGGCGTTCCTCATGGTCCGGGCGCAGCGGAACGTCA
CCGAACCCACCGTCGAGGCGCGCACCATGTACCGGCCTGCCGCGATCGGCGGCAGCCTGCTGGCCCTGGTGGCCGCGGTC
GGGCTCTTCGTCACCGGTGACGTGCAGGGCAAGCTCATGTTCGATCAACAGCCCATGAAGATGGCGTCGGCGGAATCGCT
GTGCGACACCGCAACAGATCCCGACTTCTCGATCCTCACGGTGGGCACGCACAACAACTGCGACAGCGTGATTCACGTGC
TCGACGTGCCGTACGTGTTGCCCTTCCTCGCCGAGGGACAGTTCAGCGGCGTCACCCTCGAAGGCGTCAACGATCTGCAG
GCACAGTACGAGGAGCGGTTCGGCCCCGGCGACTACCGGCCGAATCTGTTCGTCACCTACTGGGCGTTCCGCGCGATGAT
CGGCCTGCTGCTGGTTCCGGTCGCATTCGCTCTTGTCACCGTGTGGCTCACCCGGCGCGGCCGGATCCCCCACCAGCGGT
GGTACGGCTGGGCGGGCGTGCTGACGATCCCGACCCCGTTCCTGGCCAACAGCGCGGGATGGGTGTTCACCGAGATGGGT
CGCCAGCCCTGGGTGGTGGTCCCCAACCCCACCGGCGATCAGCTCGTGCGAATGACCGTCCAGGACGGCGTATCCAACCA
CTCGGCGGGCATGGTGCTGTTCTCCCTGGTGATGTTCACCCTCGTCTACGGCGCGCTCGCCGTGGTCTGGTTCGGCCTGA
TGCGCCGTTACGTGCTCAAGGGTCCGCAGGAGCACGACTCCGAACCCGCACCGCCGTCGAAGCCGGACGACGAAGAACTC
GCCCCGCTGTCGTTCGCGTACTGA

Upstream 100 bases:

>100_bases
TTGAGGCGGTCTCAAGAGTGACCAAAGTCCCTGCCTCTTCCCCCGAAATCGCTACTACACTCTGTCGTAGACCGGTGTAG
AGCCTGCGGAAGTTGGTCAG

Downstream 100 bases:

>100_bases
GAGGACGTGGCTGCTGTGGGTCTTCAGGAACTGTGGTTCATCCTCATCGCCGCACTGTTTCTCGGCTTCCTCGTGCTGGA
GGGCTTCGACTTCGGCGTCG

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MDALDVSRWQFGITTVYHFIFVPLTIGLAPILAVMQTAWVVTDNPAWYRLTRFFGKLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDIFGAPLAFEGLVAFFFESTFIGLWIFGWSRLPRLVHLACIWIVAIAVNASAYFIIAANSFMQHPVGARYNP
ESGRAELTDFGALLTNNTAVWAFQHAVAGALLTAGAFVAGVSAFLMVRAQRNVTEPTVEARTMYRPAAIGGSLLALVAAV
GLFVTGDVQGKLMFDQQPMKMASAESLCDTATDPDFSILTVGTHNNCDSVIHVLDVPYVLPFLAEGQFSGVTLEGVNDLQ
AQYEERFGPGDYRPNLFVTYWAFRAMIGLLLVPVAFALVTVWLTRRGRIPHQRWYGWAGVLTIPTPFLANSAGWVFTEMG
RQPWVVVPNPTGDQLVRMTVQDGVSNHSAGMVLFSLVMFTLVYGALAVVWFGLMRRYVLKGPQEHDSEPAPPSKPDDEEL
APLSFAY

Sequences:

>Translated_487_residues
MDALDVSRWQFGITTVYHFIFVPLTIGLAPILAVMQTAWVVTDNPAWYRLTRFFGKLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDIFGAPLAFEGLVAFFFESTFIGLWIFGWSRLPRLVHLACIWIVAIAVNASAYFIIAANSFMQHPVGARYNP
ESGRAELTDFGALLTNNTAVWAFQHAVAGALLTAGAFVAGVSAFLMVRAQRNVTEPTVEARTMYRPAAIGGSLLALVAAV
GLFVTGDVQGKLMFDQQPMKMASAESLCDTATDPDFSILTVGTHNNCDSVIHVLDVPYVLPFLAEGQFSGVTLEGVNDLQ
AQYEERFGPGDYRPNLFVTYWAFRAMIGLLLVPVAFALVTVWLTRRGRIPHQRWYGWAGVLTIPTPFLANSAGWVFTEMG
RQPWVVVPNPTGDQLVRMTVQDGVSNHSAGMVLFSLVMFTLVYGALAVVWFGLMRRYVLKGPQEHDSEPAPPSKPDDEEL
APLSFAY
>Mature_487_residues
MDALDVSRWQFGITTVYHFIFVPLTIGLAPILAVMQTAWVVTDNPAWYRLTRFFGKLFLINFAIGVATGIVQEFQFGMNW
SEYSRFVGDIFGAPLAFEGLVAFFFESTFIGLWIFGWSRLPRLVHLACIWIVAIAVNASAYFIIAANSFMQHPVGARYNP
ESGRAELTDFGALLTNNTAVWAFQHAVAGALLTAGAFVAGVSAFLMVRAQRNVTEPTVEARTMYRPAAIGGSLLALVAAV
GLFVTGDVQGKLMFDQQPMKMASAESLCDTATDPDFSILTVGTHNNCDSVIHVLDVPYVLPFLAEGQFSGVTLEGVNDLQ
AQYEERFGPGDYRPNLFVTYWAFRAMIGLLLVPVAFALVTVWLTRRGRIPHQRWYGWAGVLTIPTPFLANSAGWVFTEMG
RQPWVVVPNPTGDQLVRMTVQDGVSNHSAGMVLFSLVMFTLVYGALAVVWFGLMRRYVLKGPQEHDSEPAPPSKPDDEEL
APLSFAY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=540, Percent_Identity=32.7777777777778, Blast_Score=278, Evalue=6e-76,
Organism=Escherichia coli, GI1787212, Length=530, Percent_Identity=34.1509433962264, Blast_Score=261, Evalue=6e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53729; Mature: 53729

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALDVSRWQFGITTVYHFIFVPLTIGLAPILAVMQTAWVVTDNPAWYRLTRFFGKLFLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHH
NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAFEGLVAFFFESTFIGLWIFGWSRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PRLVHLACIWIVAIAVNASAYFIIAANSFMQHPVGARYNPESGRAELTDFGALLTNNTAV
HHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE
WAFQHAVAGALLTAGAFVAGVSAFLMVRAQRNVTEPTVEARTMYRPAAIGGSLLALVAAV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHCCHHHHHHHHHH
GLFVTGDVQGKLMFDQQPMKMASAESLCDTATDPDFSILTVGTHNNCDSVIHVLDVPYVL
HHEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
PFLAEGQFSGVTLEGVNDLQAQYEERFGPGDYRPNLFVTYWAFRAMIGLLLVPVAFALVT
HHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
VWLTRRGRIPHQRWYGWAGVLTIPTPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRMTV
HHHHHCCCCCHHHHCCEEEEEECCCHHHCCCCCCEEHHCCCCCEEEECCCCCCCEEEEEH
QDGVSNHSAGMVLFSLVMFTLVYGALAVVWFGLMRRYVLKGPQEHDSEPAPPSKPDDEEL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
APLSFAY
CCCCCCC
>Mature Secondary Structure
MDALDVSRWQFGITTVYHFIFVPLTIGLAPILAVMQTAWVVTDNPAWYRLTRFFGKLFLI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHH
NFAIGVATGIVQEFQFGMNWSEYSRFVGDIFGAPLAFEGLVAFFFESTFIGLWIFGWSRL
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PRLVHLACIWIVAIAVNASAYFIIAANSFMQHPVGARYNPESGRAELTDFGALLTNNTAV
HHHHHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEE
WAFQHAVAGALLTAGAFVAGVSAFLMVRAQRNVTEPTVEARTMYRPAAIGGSLLALVAAV
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHCCHHHHHHHHHH
GLFVTGDVQGKLMFDQQPMKMASAESLCDTATDPDFSILTVGTHNNCDSVIHVLDVPYVL
HHEEECCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHH
PFLAEGQFSGVTLEGVNDLQAQYEERFGPGDYRPNLFVTYWAFRAMIGLLLVPVAFALVT
HHHCCCCCCCEEECCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
VWLTRRGRIPHQRWYGWAGVLTIPTPFLANSAGWVFTEMGRQPWVVVPNPTGDQLVRMTV
HHHHHCCCCCHHHHCCEEEEEECCCHHHCCCCCCEEHHCCCCCEEEECCCCCCCEEEEEH
QDGVSNHSAGMVLFSLVMFTLVYGALAVVWFGLMRRYVLKGPQEHDSEPAPPSKPDDEEL
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
APLSFAY
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]