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The map label for this gene is cydB [H]

Identifier: 119869128

GI number: 119869128

Start: 3236626

End: 3237669

Strand: Direct

Name: cydB [H]

Synonym: Mkms_3096

Alternate gene names: 119869128

Gene position: 3236626-3237669 (Clockwise)

Preceding gene: 119869127

Following gene: 119869129

Centisome position: 56.41

GC content: 66.67

Gene sequence:

>1044_bases
GTGGGTCTTCAGGAACTGTGGTTCATCCTCATCGCCGCACTGTTTCTCGGCTTCCTCGTGCTGGAGGGCTTCGACTTCGG
CGTCGGCATGCTGATGGCCCCGATGGGCATCGTCGGCGAAGGCACTCCCGAGACGCGCCGCAGGGCGGTGCTCAACACGA
TCGGCCCGGTCTGGGACGCCAACGAGGTGTGGCTCATCACCGCGGGCGCTTCGATGTTCGCGGCGTTCCCGGTCTGGTAC
GCCACGGTGTTCTCGGCGCTCTACCTGCCGTTGCTGGCGATCCTGTTCGGCATGATCCTGCGCATCGTCGGCATCGAGTG
GCGCGGCAAGATCGACGACCCCACATGGCGCAGACGGGCGGACTGGGGCATCGCGCTGGGGTCGTGGCTGCCGGCGATCC
TGTGGGGTGTGGCCTTCGCCGTGCTGGTGCGCGGGCTCCCGGTGGATGCCGAGCAGCAGGTGGTCGGCCTGACGTTCGGT
GACGTGGTCAACGCCTACACGCTGCTGGGCGGGCTGGCGACGTGTTCGCTGTTCCTGTTCTACGGTTCGACGTTCCTGGC
GCTGAAGACCTCCGGTCCGGTGCGCGACGACGCTTTCCGCTTCGTCCGGATCCTGTCGGCGCCGGTCATCGTGCTCGCCG
GCGGGTTCGGCCTGTGGACGCAGCTGGCGTACGGCAAACCCTGGACCTGGGCGGCGTTGGCGGCCGCGGTGGTCGCACTG
CTGGTCGCGGTCGCACTGATGTGGACCGGTGGCCGCGAAGGGTGGGCGTTCGTCTCCACCGTCGTGGTCGTCGCGGCGGT
CGCGACGCTCATCTTCGGCACGCTGTACCCGTACCTACTCAATTCGACGCTCAACCCGGAGTGGGGAGTCACGATCTTCA
ACGGATCGTCCACCCCGTACACGCTGAAGATCATGTCCTGGGCGTCGCTGACGCTGCTGCCGTTGGTGCTCATCTACCAG
GGCTGGACGTATTGGGTGTTCCGGCAACGCATCTCGGCTGACCGCATCCCGGAATCGGTCGGACTGAGCAAGCAGGCACC
ATGA

Upstream 100 bases:

>100_bases
GGGTCCGCAGGAGCACGACTCCGAACCCGCACCGCCGTCGAAGCCGGACGACGAAGAACTCGCCCCGCTGTCGTTCGCGT
ACTGAGAGGACGTGGCTGCT

Downstream 100 bases:

>100_bases
ACCTCTTCGCCGCCTCCGCGGTGATGCGGCGCTTCCTCGTGGCTTCGGTGATCTGCGGTGTGGTGATCAGCGCCGCGACC
ATCGCCTCCGCTGTGGTGCT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MGLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGTPETRRRAVLNTIGPVWDANEVWLITAGASMFAAFPVWY
ATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWRRRADWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFG
DVVNAYTLLGGLATCSLFLFYGSTFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAVVAL
LVAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSSTPYTLKIMSWASLTLLPLVLIYQ
GWTYWVFRQRISADRIPESVGLSKQAP

Sequences:

>Translated_347_residues
MGLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGTPETRRRAVLNTIGPVWDANEVWLITAGASMFAAFPVWY
ATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWRRRADWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFG
DVVNAYTLLGGLATCSLFLFYGSTFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAVVAL
LVAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSSTPYTLKIMSWASLTLLPLVLIYQ
GWTYWVFRQRISADRIPESVGLSKQAP
>Mature_346_residues
GLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGTPETRRRAVLNTIGPVWDANEVWLITAGASMFAAFPVWYA
TVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWRRRADWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGD
VVNAYTLLGGLATCSLFLFYGSTFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAVVALL
VAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSSTPYTLKIMSWASLTLLPLVLIYQG
WTYWVFRQRISADRIPESVGLSKQAP

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=377, Percent_Identity=29.4429708222812, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787213, Length=373, Percent_Identity=29.2225201072386, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37896; Mature: 37765

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: PS00782 TFIIB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGTPETRRRAVLNTIGPVWDA
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
NEVWLITAGASMFAAFPVWYATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWRRRA
CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHC
DWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGDVVNAYTLLGGLATCSLFLF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
YGSTFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAVVAL
HCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCHHHHHHHHHHHH
LVAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSSTPY
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCE
TLKIMSWASLTLLPLVLIYQGWTYWVFRQRISADRIPESVGLSKQAP
EEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCC
>Mature Secondary Structure 
GLQELWFILIAALFLGFLVLEGFDFGVGMLMAPMGIVGEGTPETRRRAVLNTIGPVWDA
CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
NEVWLITAGASMFAAFPVWYATVFSALYLPLLAILFGMILRIVGIEWRGKIDDPTWRRRA
CCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHC
DWGIALGSWLPAILWGVAFAVLVRGLPVDAEQQVVGLTFGDVVNAYTLLGGLATCSLFLF
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
YGSTFLALKTSGPVRDDAFRFVRILSAPVIVLAGGFGLWTQLAYGKPWTWAALAAAVVAL
HCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCHHHHHHHHHHHH
LVAVALMWTGGREGWAFVSTVVVVAAVATLIFGTLYPYLLNSTLNPEWGVTIFNGSSTPY
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCE
TLKIMSWASLTLLPLVLIYQGWTYWVFRQRISADRIPESVGLSKQAP
EEEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]