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The map label for this gene is yfdE [H]

Identifier: 119867658

GI number: 119867658

Start: 1728594

End: 1729793

Strand: Reverse

Name: yfdE [H]

Synonym: Mkms_1613

Alternate gene names: 119867658

Gene position: 1729793-1728594 (Counterclockwise)

Preceding gene: 119867659

Following gene: 119867657

Centisome position: 30.15

GC content: 69.33

Gene sequence:

>1200_bases
ATGGCAGGCGCACTGGACGGTATCCGGGTCATCGAGGTCGGCACCCTGATCTCGGGTCCGTTCGCCGGCCGCTTGCTCGG
CGACATGGGCGCCGAGGTGCTCAAGATCGAACCCCCCGCCGCCCCGGATCCGTTGCGCACCTGGGGCCAGGCCGAACTCG
ACGGCCACCACTTCTTCTGGACGGTCCACGCCCGCAACAAGAAGGCGATCACCCTGGATCTGCGCACACCGCGTGGCCGC
GAGATCTTCCTCGAACTCGTCGAGCAGACCGACGTCATCGTCGAGAACTTCCGGCCAGGCACGCTGGAGCGCTGGGATCT
CGGCTACGACGTCCTCAGGGAGCGCAACAAGGGCATCATCCTGGTGCGGGTCTCCGGATATGGCCAGACCGGGCCGGACG
CCCACCGCGCCGGATACGCCTCGGTCGCCGAGGCCGCCAGCGGACTGCGCCACCTCAACGGTTTCCCGGGCGGCCCGCCG
CCACGGCTGGCCCTGTCGTTGGGTGACAGTCTGGCCGGCATGTTCGCCGCACAGGGCGCGCTGGCGGCGCTGTACCGCCG
CACCGTCACCGGTGAGGGTCAGGTCGTCGACACCGCACTCACCGAATCCTGTCTGGCCGTGCAGGAGTCGACGATTCCCG
ACTACGACGTCGGCGGCGTGGTGCGCGGCCCGTCGGGCACCCGGCTCGAAGGCATCGCCCCGTCGAACATCTACCGCACC
GCCGACGGCAGCTGGGTCGTCATCGCGGCCAACCAGGACACCGTGTTCCGCCGACTGTGCGCCGCGATGGGGCAACCCGA
ACTGGCGACCGACGACCGGTTCGCCGATCACCGTGCGCGCGGCCGCAATCAGGACGAACTCGACAAGATCATCGGCGACT
GGGCCGCCGAACGCCAACCCGGTGACATCATCGAGACCCTGTCGGCGGCCGGGGTGATCGCGGGGCCGATCAACACCGTC
GCCGAGGTGGTCGACGATCCGCAGTTGCGCGCGCGCGGCATGCTCGCCGAACACTGGGACGAACGCGTCGATCGCGCGGT
CCTGGGACCGGGAATCGTTCCGGTGCTGTCGGAATCACCGGGCAGCATCCGCAACGCCGGGCCGGCGCATCCGGGCCAGC
ACAACATCGAGGTGTACACCGGGCTTCTCGGCAAGACCGCCGAAGAAGTCGCGCAACTGCAGGCCGAGGGGGTGCTGTGA

Upstream 100 bases:

>100_bases
ACTACTACTCCGGACCCGACCAACGTGAGACGCTGCGGGAGGCGGTCGGTATCTGCACCGACTGGCTGCACCGGCACGGA
TTTTCACTCTCGGAGGGTTG

Downstream 100 bases:

>100_bases
GCGACTTGCCCGCCAAGGTCGACATCCGTGAGGTCTCGCTGCGCGACGGCCTGCAGATCGAACAGCCGATTCCCCTGTCG
GCCAAGCTCGAACTGCTCGA

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MAGALDGIRVIEVGTLISGPFAGRLLGDMGAEVLKIEPPAAPDPLRTWGQAELDGHHFFWTVHARNKKAITLDLRTPRGR
EIFLELVEQTDVIVENFRPGTLERWDLGYDVLRERNKGIILVRVSGYGQTGPDAHRAGYASVAEAASGLRHLNGFPGGPP
PRLALSLGDSLAGMFAAQGALAALYRRTVTGEGQVVDTALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPSNIYRT
ADGSWVVIAANQDTVFRRLCAAMGQPELATDDRFADHRARGRNQDELDKIIGDWAAERQPGDIIETLSAAGVIAGPINTV
AEVVDDPQLRARGMLAEHWDERVDRAVLGPGIVPVLSESPGSIRNAGPAHPGQHNIEVYTGLLGKTAEEVAQLQAEGVL

Sequences:

>Translated_399_residues
MAGALDGIRVIEVGTLISGPFAGRLLGDMGAEVLKIEPPAAPDPLRTWGQAELDGHHFFWTVHARNKKAITLDLRTPRGR
EIFLELVEQTDVIVENFRPGTLERWDLGYDVLRERNKGIILVRVSGYGQTGPDAHRAGYASVAEAASGLRHLNGFPGGPP
PRLALSLGDSLAGMFAAQGALAALYRRTVTGEGQVVDTALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPSNIYRT
ADGSWVVIAANQDTVFRRLCAAMGQPELATDDRFADHRARGRNQDELDKIIGDWAAERQPGDIIETLSAAGVIAGPINTV
AEVVDDPQLRARGMLAEHWDERVDRAVLGPGIVPVLSESPGSIRNAGPAHPGQHNIEVYTGLLGKTAEEVAQLQAEGVL
>Mature_398_residues
AGALDGIRVIEVGTLISGPFAGRLLGDMGAEVLKIEPPAAPDPLRTWGQAELDGHHFFWTVHARNKKAITLDLRTPRGRE
IFLELVEQTDVIVENFRPGTLERWDLGYDVLRERNKGIILVRVSGYGQTGPDAHRAGYASVAEAASGLRHLNGFPGGPPP
RLALSLGDSLAGMFAAQGALAALYRRTVTGEGQVVDTALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPSNIYRTA
DGSWVVIAANQDTVFRRLCAAMGQPELATDDRFADHRARGRNQDELDKIIGDWAAERQPGDIIETLSAAGVIAGPINTVA
EVVDDPQLRARGMLAEHWDERVDRAVLGPGIVPVLSESPGSIRNAGPAHPGQHNIEVYTGLLGKTAEEVAQLQAEGVL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=32.3232323232323, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI300863124, Length=330, Percent_Identity=34.2424242424242, Blast_Score=206, Evalue=3e-53,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=29.7229219143577, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI13376042, Length=330, Percent_Identity=29.6969696969697, Blast_Score=164, Evalue=1e-40,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=28.25, Blast_Score=139, Evalue=6e-33,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=28.25, Blast_Score=138, Evalue=7e-33,
Organism=Homo sapiens, GI266458393, Length=266, Percent_Identity=32.3308270676692, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458397, Length=269, Percent_Identity=32.7137546468402, Blast_Score=118, Evalue=1e-26,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=33.7837837837838, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI42822893, Length=148, Percent_Identity=33.7837837837838, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI87082093, Length=336, Percent_Identity=33.3333333333333, Blast_Score=202, Evalue=4e-53,
Organism=Escherichia coli, GI1786222, Length=376, Percent_Identity=28.7234042553192, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1788717, Length=359, Percent_Identity=27.2980501392758, Blast_Score=131, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI115535051, Length=314, Percent_Identity=28.0254777070064, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=269, Percent_Identity=28.996282527881, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=34, Blast_Score=218, Evalue=7e-57,
Organism=Drosophila melanogaster, GI24585488, Length=372, Percent_Identity=29.3010752688172, Blast_Score=110, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42624; Mature: 42492

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGALDGIRVIEVGTLISGPFAGRLLGDMGAEVLKIEPPAAPDPLRTWGQAELDGHHFFW
CCCCCCCEEEEEECCHHCCCHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEECCCEEEE
TVHARNKKAITLDLRTPRGREIFLELVEQTDVIVENFRPGTLERWDLGYDVLRERNKGII
EEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHCCCCCEE
LVRVSGYGQTGPDAHRAGYASVAEAASGLRHLNGFPGGPPPRLALSLGDSLAGMFAAQGA
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHH
LAALYRRTVTGEGQVVDTALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPSNIYRT
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCCCCCEEEE
ADGSWVVIAANQDTVFRRLCAAMGQPELATDDRFADHRARGRNQDELDKIIGDWAAERQP
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCC
GDIIETLSAAGVIAGPINTVAEVVDDPQLRARGMLAEHWDERVDRAVLGPGIVPVLSESP
CHHHHHHHHCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
GSIRNAGPAHPGQHNIEVYTGLLGKTAEEVAQLQAEGVL
CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGALDGIRVIEVGTLISGPFAGRLLGDMGAEVLKIEPPAAPDPLRTWGQAELDGHHFFW
CCCCCCEEEEEECCHHCCCHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCEECCCEEEE
TVHARNKKAITLDLRTPRGREIFLELVEQTDVIVENFRPGTLERWDLGYDVLRERNKGII
EEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHCCCCCEE
LVRVSGYGQTGPDAHRAGYASVAEAASGLRHLNGFPGGPPPRLALSLGDSLAGMFAAQGA
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHHH
LAALYRRTVTGEGQVVDTALTESCLAVQESTIPDYDVGGVVRGPSGTRLEGIAPSNIYRT
HHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEECCCCCCCEEEE
ADGSWVVIAANQDTVFRRLCAAMGQPELATDDRFADHRARGRNQDELDKIIGDWAAERQP
CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCC
GDIIETLSAAGVIAGPINTVAEVVDDPQLRARGMLAEHWDERVDRAVLGPGIVPVLSESP
CHHHHHHHHCCEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
GSIRNAGPAHPGQHNIEVYTGLLGKTAEEVAQLQAEGVL
CCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]