| Definition | Mycobacterium sp. KMS chromosome, complete genome. |
|---|---|
| Accession | NC_008705 |
| Length | 5,737,227 |
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The map label for this gene is ydaD [H]
Identifier: 119867344
GI number: 119867344
Start: 1388743
End: 1389600
Strand: Reverse
Name: ydaD [H]
Synonym: Mkms_1294
Alternate gene names: 119867344
Gene position: 1389600-1388743 (Counterclockwise)
Preceding gene: 119867346
Following gene: 119867343
Centisome position: 24.22
GC content: 66.67
Gene sequence:
>858_bases ATGGTTGATTCCGCACCGACGCCCGACGGCGTGATCCCCTACCCGGGCGAGACCTCCGAGATGTCCGAACGCCCCCGCGA CGAGATGAGCGACTACGTCGGCCGCGACCTGCTGGCCGGCAAGCGGGCACTGATCACCGGGGGCGACTCGGGGATCGGCC GCGCTGTTGCCGTCGCGTTCGCCAAGGAGGGCGCCGACGTGTCGATCGCCTATCTCGACGAGCACGCCGACGCCGAGCAC ACCGCGGCACTGGTCGAGCAGTGCGGACGCCGAAGCCTGCTGCTGCCCGGCGATCTGGCGGAAGCCGAGCAGTGCCGGAC CGTCGTCGAACGCACGGTCGTCGAGTTCGGCGGCCTCGACATCGTGGTCAACAACGTGGCGTATCAGAACCCGACCGAAT CGTTCACCGACATCAGTGACGAACAGTGGCGGCGCACGTTCGCCGTCAACATCGACAGCTTCTTCCGGGTCACAAAAGCC GCGCTCGAACACCTTCCCGACGGCGGCGCGATCATCAACACCAGTTCGATCAACGGGTTGCGCGGCAACAAGACGCTGAT CGACTATTCGGCCACCAAGGGCGCGGTGTTGGCGCTGACGTACTCGCTGGCGCAGTCGCTGGCGGATCGCAAGATCCGGG TCAACTGTGTGGCGCCCGGTCCGGTGTGGACACCGCTCATCCCCGCGACGATGGATGCCGAGAAGACCGAGTCATTCGGT GAGCAGACACCGATGGGCCGCGCGGCCCAACCCGACGAGATCGCCCCGTCGTACGTGTTCTTCGCCGCCGGGCGAATGTC GTCGTACTACAGCGGTGAGGTGCTCGCCCCGATCGGCGGTGAGACGCTGCCCGGTTGA
Upstream 100 bases:
>100_bases GTCAAGGATTTCGCACAACGTCTTCCCCCGCCTTCGCGAATTGGATTCACCTGCCGAAACAGCCCGGTTTGACGGCGCCC GAGCGGGTTACCCGGCGGGC
Downstream 100 bases:
>100_bases CCGTTTAGTGGCCATCAGATCGGGCACCCTGTGACCACGTGTTCGATCAAGGTGAAAGGTGAGCATGACCGAGAAGAACA GTGGTCCCGAAGAAGGCATC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: GSP39 [H]
Number of amino acids: Translated: 285; Mature: 285
Protein sequence:
>285_residues MVDSAPTPDGVIPYPGETSEMSERPRDEMSDYVGRDLLAGKRALITGGDSGIGRAVAVAFAKEGADVSIAYLDEHADAEH TAALVEQCGRRSLLLPGDLAEAEQCRTVVERTVVEFGGLDIVVNNVAYQNPTESFTDISDEQWRRTFAVNIDSFFRVTKA ALEHLPDGGAIINTSSINGLRGNKTLIDYSATKGAVLALTYSLAQSLADRKIRVNCVAPGPVWTPLIPATMDAEKTESFG EQTPMGRAAQPDEIAPSYVFFAAGRMSSYYSGEVLAPIGGETLPG
Sequences:
>Translated_285_residues MVDSAPTPDGVIPYPGETSEMSERPRDEMSDYVGRDLLAGKRALITGGDSGIGRAVAVAFAKEGADVSIAYLDEHADAEH TAALVEQCGRRSLLLPGDLAEAEQCRTVVERTVVEFGGLDIVVNNVAYQNPTESFTDISDEQWRRTFAVNIDSFFRVTKA ALEHLPDGGAIINTSSINGLRGNKTLIDYSATKGAVLALTYSLAQSLADRKIRVNCVAPGPVWTPLIPATMDAEKTESFG EQTPMGRAAQPDEIAPSYVFFAAGRMSSYYSGEVLAPIGGETLPG >Mature_285_residues MVDSAPTPDGVIPYPGETSEMSERPRDEMSDYVGRDLLAGKRALITGGDSGIGRAVAVAFAKEGADVSIAYLDEHADAEH TAALVEQCGRRSLLLPGDLAEAEQCRTVVERTVVEFGGLDIVVNNVAYQNPTESFTDISDEQWRRTFAVNIDSFFRVTKA ALEHLPDGGAIINTSSINGLRGNKTLIDYSATKGAVLALTYSLAQSLADRKIRVNCVAPGPVWTPLIPATMDAEKTESFG EQTPMGRAAQPDEIAPSYVFFAAGRMSSYYSGEVLAPIGGETLPG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=32.9317269076305, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI15277342, Length=248, Percent_Identity=34.2741935483871, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=33.7662337662338, Blast_Score=108, Evalue=7e-24, Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=31.5352697095436, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI4504505, Length=187, Percent_Identity=36.3636363636364, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI7705925, Length=256, Percent_Identity=32.421875, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI10190704, Length=261, Percent_Identity=30.6513409961686, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=28.8, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI224922801, Length=171, Percent_Identity=33.9181286549708, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=29.3040293040293, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI109715829, Length=232, Percent_Identity=30.6034482758621, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=30.8108108108108, Blast_Score=79, Evalue=6e-15, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=30.7086614173228, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=30.3664921465969, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI126723750, Length=271, Percent_Identity=26.5682656826568, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4758504, Length=231, Percent_Identity=29.004329004329, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=30, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI142976729, Length=225, Percent_Identity=27.1111111111111, Blast_Score=70, Evalue=3e-12, Organism=Escherichia coli, GI1789378, Length=278, Percent_Identity=44.2446043165468, Blast_Score=233, Evalue=7e-63, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=29.7619047619048, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=31.8548387096774, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=33.7448559670782, Blast_Score=111, Evalue=7e-26, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=31.3008130081301, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=28.5714285714286, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=34.7490347490347, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=31.0204081632653, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=30.1158301158301, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787526, Length=234, Percent_Identity=28.6324786324786, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082160, Length=246, Percent_Identity=29.2682926829268, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI2367365, Length=238, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=6e-17, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=35.4330708661417, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=34.4827586206897, Blast_Score=116, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=33.8461538461538, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=34.4827586206897, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17555706, Length=282, Percent_Identity=34.7517730496454, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=30.7692307692308, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=34.9809885931559, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=33.955223880597, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17559104, Length=263, Percent_Identity=34.9809885931559, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=30.6513409961686, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=34.0909090909091, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=31.6793893129771, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=33.206106870229, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=30.2238805970149, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=31.9838056680162, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=30.0380228136882, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=30.7692307692308, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=31.8181818181818, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17560676, Length=260, Percent_Identity=30, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17538182, Length=216, Percent_Identity=32.8703703703704, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560332, Length=260, Percent_Identity=31.1538461538462, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=29.8387096774194, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.0076335877863, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=32.8125, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=29.6153846153846, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=29.6153846153846, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.4552845528455, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17568967, Length=224, Percent_Identity=29.0178571428571, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI193203117, Length=201, Percent_Identity=29.3532338308458, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=30.5699481865285, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=26.4591439688716, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203115, Length=194, Percent_Identity=28.8659793814433, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17508651, Length=244, Percent_Identity=28.6885245901639, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=249, Percent_Identity=27.710843373494, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=286, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=28.7234042553192, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=32.4110671936759, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=31.8548387096774, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=31.3008130081301, Blast_Score=97, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=28.8617886178862, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=32.5301204819277, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=29.3172690763052, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI17737361, Length=228, Percent_Identity=29.8245614035088, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI24644337, Length=256, Percent_Identity=30.46875, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI281364892, Length=176, Percent_Identity=32.3863636363636, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI18859837, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=27.6923076923077, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=8e-11, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=27.2251308900524, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30420; Mature: 30420
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDSAPTPDGVIPYPGETSEMSERPRDEMSDYVGRDLLAGKRALITGGDSGIGRAVAVAF CCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH AKEGADVSIAYLDEHADAEHTAALVEQCGRRSLLLPGDLAEAEQCRTVVERTVVEFGGLD HHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCEE IVVNNVAYQNPTESFTDISDEQWRRTFAVNIDSFFRVTKAALEHLPDGGAIINTSSINGL EEECCCCCCCCCCHHHCCCHHHHHEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCC RGNKTLIDYSATKGAVLALTYSLAQSLADRKIRVNCVAPGPVWTPLIPATMDAEKTESFG CCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH EQTPMGRAAQPDEIAPSYVFFAAGRMSSYYSGEVLAPIGGETLPG CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCC >Mature Secondary Structure MVDSAPTPDGVIPYPGETSEMSERPRDEMSDYVGRDLLAGKRALITGGDSGIGRAVAVAF CCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH AKEGADVSIAYLDEHADAEHTAALVEQCGRRSLLLPGDLAEAEQCRTVVERTVVEFGGLD HHCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCEE IVVNNVAYQNPTESFTDISDEQWRRTFAVNIDSFFRVTKAALEHLPDGGAIINTSSINGL EEECCCCCCCCCCHHHCCCHHHHHEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCC RGNKTLIDYSATKGAVLALTYSLAQSLADRKIRVNCVAPGPVWTPLIPATMDAEKTESFG CCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH EQTPMGRAAQPDEIAPSYVFFAAGRMSSYYSGEVLAPIGGETLPG CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]