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The map label for this gene is asnC [C]

Identifier: 119867286

GI number: 119867286

Start: 1323135

End: 1323665

Strand: Reverse

Name: asnC [C]

Synonym: Mkms_1236

Alternate gene names: 119867286

Gene position: 1323665-1323135 (Counterclockwise)

Preceding gene: 119867288

Following gene: 119867285

Centisome position: 23.07

GC content: 63.84

Gene sequence:

>531_bases
ATGCCCTATATGGCCAACCCCGAGGGTGAGCACGACATTCAACCGGTGTCGCTGCGCGTGAGCCAGTCGCGCCCTGGCGC
GTACTTCCAGCTCGACGAGCTGTCCAAGGCGATCATCGAGAAGCTGCAGCAGGACGGACGGCGCTCGTACGCGGGGATCG
GCAAGGCGGTCGGCCTCTCGGAGGCCGCGGTGCGACAGCGCGTCCAGCGCATGGTCGACGCCGGCGTCATGCAGATCGTC
GCGGTGACCGATCCGATGCAACTCGGGTTCGCCCGGCAGGCGATGATCGGCATCCGGTGCACCGGCGACACGACGAAGAT
CGCAGAGAAGCTCGCCGCCATCCCGTCGGTCGACTACGTGGTGCTCACCGCCGGCTCGTTCGACGCCATCGCCGAAGTGG
TCTGTGAGGACGACGACGACCTCCTCGACCTGTTGAACACGAAGATCCGCGCGCTGCCGGGAGTGGTATCCACGGAGACG
TTGGTATATCTCAAACTGGTTAAGCAGCAATATAATTGGGGAACACGATGA

Upstream 100 bases:

>100_bases
TCGGACCCACATCCCCCCTGCTGCGCATACCGCATACCGCCGCGGTCGAAACAATCGATTTCATCGATCTGGTTGCCGCT
GACGACGGATTCCGTGCACA

Downstream 100 bases:

>100_bases
CGCAGTCCTATATCACCGAGCCCGTCACGAGCGAACTCGGGGCGAAAGCCAACCGGCACCTGTGGGGGCATTTCGCCCGC
CACGGCGAAGGCATCACCCC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MPYMANPEGEHDIQPVSLRVSQSRPGAYFQLDELSKAIIEKLQQDGRRSYAGIGKAVGLSEAAVRQRVQRMVDAGVMQIV
AVTDPMQLGFARQAMIGIRCTGDTTKIAEKLAAIPSVDYVVLTAGSFDAIAEVVCEDDDDLLDLLNTKIRALPGVVSTET
LVYLKLVKQQYNWGTR

Sequences:

>Translated_176_residues
MPYMANPEGEHDIQPVSLRVSQSRPGAYFQLDELSKAIIEKLQQDGRRSYAGIGKAVGLSEAAVRQRVQRMVDAGVMQIV
AVTDPMQLGFARQAMIGIRCTGDTTKIAEKLAAIPSVDYVVLTAGSFDAIAEVVCEDDDDLLDLLNTKIRALPGVVSTET
LVYLKLVKQQYNWGTR
>Mature_175_residues
PYMANPEGEHDIQPVSLRVSQSRPGAYFQLDELSKAIIEKLQQDGRRSYAGIGKAVGLSEAAVRQRVQRMVDAGVMQIVA
VTDPMQLGFARQAMIGIRCTGDTTKIAEKLAAIPSVDYVVLTAGSFDAIAEVVCEDDDDLLDLLNTKIRALPGVVSTETL
VYLKLVKQQYNWGTR

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=140, Percent_Identity=30, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013249
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19271; Mature: 19140

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYMANPEGEHDIQPVSLRVSQSRPGAYFQLDELSKAIIEKLQQDGRRSYAGIGKAVGLS
CCCCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EAAVRQRVQRMVDAGVMQIVAVTDPMQLGFARQAMIGIRCTGDTTKIAEKLAAIPSVDYV
HHHHHHHHHHHHHHHHHEEHEECCCHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCEE
VLTAGSFDAIAEVVCEDDDDLLDLLNTKIRALPGVVSTETLVYLKLVKQQYNWGTR
EEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PYMANPEGEHDIQPVSLRVSQSRPGAYFQLDELSKAIIEKLQQDGRRSYAGIGKAVGLS
CCCCCCCCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
EAAVRQRVQRMVDAGVMQIVAVTDPMQLGFARQAMIGIRCTGDTTKIAEKLAAIPSVDYV
HHHHHHHHHHHHHHHHHEEHEECCCHHHHHHHHHEEEEEECCCHHHHHHHHHHCCCCCEE
VLTAGSFDAIAEVVCEDDDDLLDLLNTKIRALPGVVSTETLVYLKLVKQQYNWGTR
EEECCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]