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The map label for this gene is jag [H]

Identifier: 119866061

GI number: 119866061

Start: 2860

End: 3405

Strand: Reverse

Name: jag [H]

Synonym: Mkms_0004

Alternate gene names: 119866061

Gene position: 3405-2860 (Counterclockwise)

Preceding gene: 119866062

Following gene: 119866060

Centisome position: 0.06

GC content: 69.41

Gene sequence:

>546_bases
ATGACCGACGCTGATACGACCGAGCGGACCGAGGACGTCGAGACGCGGGATGCCGAGGAGATCACGGCCCCGGAGGACGA
CCTCGAGGACCGGTTGGTGGCCGAAGGCGAGATCGCCGGCGACTACCTGGAGGAGTTGCTCGACCTGTTGGACTTCGACG
GTGACATCGATCTGGATGTCGAGGGCGACCGGGCGGTCGTGAGCATCGACGGCGGGACCGACCTGAACAAGTTGGTGGGC
CGCAAGGGTGAGGTGCTCGACGCGCTGCAGGAGCTGACGCGGTTGGCGGTCCACCAGAAGACCGGCGAGCGTAGCCGGCT
CATGCTCGACATCGCCCGCTGGCGCCGGCGCCGTCGCGACGAGCTGGCCGCGCTGGGGGACAAGGTCGCGCGCCGCGTCC
TCGAAACCGGTGAGCGCGAAGAGCTCGCCCCGATGACGCCGTTCGAACGCAAGATCGTGCACGACGCCGTTGCGGCGGTC
GCCGGTGTGCACAGCGAGAGCGAGGGCGTCGAGCCGTCGCGCCGCGTGGTCGTGCTCGCCGACTGA

Upstream 100 bases:

>100_bases
GTGGCGGACAGGCCGTGAGCCGAACGCCCAAGCCGGGAGCCCGGCCCAAGAAACGCAAGCGTTGACCAGTCGGGGACTGG
CGGAAGAGGGAGAGGCAGAC

Downstream 100 bases:

>100_bases
CCGAGTTACATCCATGTAGTTCACCGCACTGGGTCCGCCGATAGGCAGGGGATGTTTCACGTGAAACACGTCGCGCCACC
GCCCACCGCCGAGGCGGTCT

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTDADTTERTEDVETRDAEEITAPEDDLEDRLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGDRAVVSIDGGTDLNKLVG
RKGEVLDALQELTRLAVHQKTGERSRLMLDIARWRRRRRDELAALGDKVARRVLETGEREELAPMTPFERKIVHDAVAAV
AGVHSESEGVEPSRRVVVLAD

Sequences:

>Translated_181_residues
MTDADTTERTEDVETRDAEEITAPEDDLEDRLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGDRAVVSIDGGTDLNKLVG
RKGEVLDALQELTRLAVHQKTGERSRLMLDIARWRRRRRDELAALGDKVARRVLETGEREELAPMTPFERKIVHDAVAAV
AGVHSESEGVEPSRRVVVLAD
>Mature_180_residues
TDADTTERTEDVETRDAEEITAPEDDLEDRLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGDRAVVSIDGGTDLNKLVGR
KGEVLDALQELTRLAVHQKTGERSRLMLDIARWRRRRRDELAALGDKVARRVLETGEREELAPMTPFERKIVHDAVAAVA
GVHSESEGVEPSRRVVVLAD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 20145; Mature: 20013

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDADTTERTEDVETRDAEEITAPEDDLEDRLVAEGEIAGDYLEELLDLLDFDGDIDLDV
CCCCCCCCHHHCCHHCCHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEE
EGDRAVVSIDGGTDLNKLVGRKGEVLDALQELTRLAVHQKTGERSRLMLDIARWRRRRRD
CCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ELAALGDKVARRVLETGEREELAPMTPFERKIVHDAVAAVAGVHSESEGVEPSRRVVVLA
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
D
C
>Mature Secondary Structure 
TDADTTERTEDVETRDAEEITAPEDDLEDRLVAEGEIAGDYLEELLDLLDFDGDIDLDV
CCCCCCCHHHCCHHCCHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEE
EGDRAVVSIDGGTDLNKLVGRKGEVLDALQELTRLAVHQKTGERSRLMLDIARWRRRRRD
CCCEEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ELAALGDKVARRVLETGEREELAPMTPFERKIVHDAVAAVAGVHSESEGVEPSRRVVVLA
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
D
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]