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The map label for this gene is IS1086 [H]

Identifier: 119855213

GI number: 119855213

Start: 36599

End: 37912

Strand: Reverse

Name: IS1086 [H]

Synonym: Mkms_5827

Alternate gene names: 119855213

Gene position: 37912-36599 (Counterclockwise)

Preceding gene: 119855214

Following gene: 119855212

Centisome position: 17.49

GC content: 65.22

Gene sequence:

>1314_bases
GTGCAGCGTCAGTTTTGGCGGCTGATCGCCCAGGGTGTCTCCACCGACGACGCAGCCGCAGAGGTCGGCGTGTCGACACC
GGTGGCGACCAGGTGGTTCCACCACGCTGGCGGCATGACGCCGATCAGTCTGGATGAGCCCACGGGCCGGTATCTGTCGT
TCGCCGAGCGGGAGGAGATCGCACTGCTACGCGCCCAGGGCGCCGGGGTGCGTGAGATCGCCCGCGAGATCAAGCGTGAC
CCCTCGACAGTTTCGCGGGAACTGCGGCGCAACGCAGCCACCCGCAGCGGCACGCAGGTGTACCGCGCAGGGGTGGCGCA
GTGGAAGGCCCAGCAAGCAGCAAAGCGCCCGAAACCCGCGAAACTGGCAGTCAACCCGCAGCTGCGTGAGTACGTGCAGC
AGCGGCTCGATGGCAGTGTCCGCGGACCCGACGGCACCGCCGTCGCAGGTCCGCAGACCAAGGCCTGGAACGGCCGCAAC
AAGCCGCACCGACAAGACCGACGGTGGTCGACAGCATGGAGCCCGGAACAGATTGCCCACCGCTTACCGCTGGATTTCCC
CGATGATGAGTCCATGCGCATCAGCCATGAGGCGATCTATCAGTCCTTGTTCATCGAGGGGCGTGGGGCGCTCAAACGGG
AATTGGTCGCGTGCCTGCGGACCGGTCGTGCGCTGCGGGTCCCGCGGGCCAGGACACAGAACAAACCGCAGGGACATGTC
ACCGCGGACGTCGTGATCAGCAAACGCCCTGCCGAAGCCGCCGATCGCGCAGTTCCTGGGCATTGGGAGGGTGATTTGAT
CATCGGTGCGGGCCGGTCGGCGATTGCCACCGTGGTGGAACGCAAGAGCCGCTCGGTGATGCTGGTTCACCTTCCCCGCC
TCGAGGGGTGGGGTCTGGCGCCGCCGGTGAAGAACGGGCCGGCGCTCAGCGGCTACGGCGCCGAGGCGATGAACGCTGCC
CTGATCGCCTCACTGGCACAGCTACCCAAGCAGCTGCGTCAGACGTTGACATGGGACCGCGGCAAAGAGTTGGCCGCGCA
CGCCCAGTTCACCTTCGACACCGGAACGAAGGTGTTTTTCGCCGACCCGCACTCGCCATGGCAGCGGCCTACCAACGAGA
ACACCAATGGCGTTCTGCGTCAGTACTTTCCGAAAGGCACCGACTTATCTCGATGGTCGGCTCAAGACCTCGAAGCGGTC
GCACTGACGCTCAACAACCGACCCCGAAAGGTCCTCGGCTGGAAGACTCCCGCCGAAGTCTTTGCCCAACAGCTACACTC
ACTCCAACAACCCGGTGTTGCAACGACCGATTGA

Upstream 100 bases:

>100_bases
TAAGGACGCGGAATCGGTTGGTAGGCGACGGCAGTGGGCGGCTGACCGTGCGTTGCGGCCTGCGATGCGCTCACCAGGGC
GCCCGGACCCGTCGCGGTCG

Downstream 100 bases:

>100_bases
ACCCGCCCAATACACCGCGGTGGCCTTCACTGAACGGTTGGCCGCTGAAGGGATCGTGCCGTCGATCGGTTCGGTCGGCG
ATAGTTTTGATAATGCTCTG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MQRQFWRLIAQGVSTDDAAAEVGVSTPVATRWFHHAGGMTPISLDEPTGRYLSFAEREEIALLRAQGAGVREIAREIKRD
PSTVSRELRRNAATRSGTQVYRAGVAQWKAQQAAKRPKPAKLAVNPQLREYVQQRLDGSVRGPDGTAVAGPQTKAWNGRN
KPHRQDRRWSTAWSPEQIAHRLPLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALRVPRARTQNKPQGHV
TADVVISKRPAEAADRAVPGHWEGDLIIGAGRSAIATVVERKSRSVMLVHLPRLEGWGLAPPVKNGPALSGYGAEAMNAA
LIASLAQLPKQLRQTLTWDRGKELAAHAQFTFDTGTKVFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAQDLEAV
ALTLNNRPRKVLGWKTPAEVFAQQLHSLQQPGVATTD

Sequences:

>Translated_437_residues
MQRQFWRLIAQGVSTDDAAAEVGVSTPVATRWFHHAGGMTPISLDEPTGRYLSFAEREEIALLRAQGAGVREIAREIKRD
PSTVSRELRRNAATRSGTQVYRAGVAQWKAQQAAKRPKPAKLAVNPQLREYVQQRLDGSVRGPDGTAVAGPQTKAWNGRN
KPHRQDRRWSTAWSPEQIAHRLPLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALRVPRARTQNKPQGHV
TADVVISKRPAEAADRAVPGHWEGDLIIGAGRSAIATVVERKSRSVMLVHLPRLEGWGLAPPVKNGPALSGYGAEAMNAA
LIASLAQLPKQLRQTLTWDRGKELAAHAQFTFDTGTKVFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAQDLEAV
ALTLNNRPRKVLGWKTPAEVFAQQLHSLQQPGVATTD
>Mature_437_residues
MQRQFWRLIAQGVSTDDAAAEVGVSTPVATRWFHHAGGMTPISLDEPTGRYLSFAEREEIALLRAQGAGVREIAREIKRD
PSTVSRELRRNAATRSGTQVYRAGVAQWKAQQAAKRPKPAKLAVNPQLREYVQQRLDGSVRGPDGTAVAGPQTKAWNGRN
KPHRQDRRWSTAWSPEQIAHRLPLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALRVPRARTQNKPQGHV
TADVVISKRPAEAADRAVPGHWEGDLIIGAGRSAIATVVERKSRSVMLVHLPRLEGWGLAPPVKNGPALSGYGAEAMNAA
LIASLAQLPKQLRQTLTWDRGKELAAHAQFTFDTGTKVFFADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAQDLEAV
ALTLNNRPRKVLGWKTPAEVFAQQLHSLQQPGVATTD

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG2826

COG function: function code L; Transposase and inactivated derivatives, IS30 family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786450, Length=406, Percent_Identity=37.9310344827586, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1790736, Length=436, Percent_Identity=36.0091743119266, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1787671, Length=436, Percent_Identity=36.0091743119266, Blast_Score=243, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337
- InterPro:   IPR001598 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 48356; Mature: 48356

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRQFWRLIAQGVSTDDAAAEVGVSTPVATRWFHHAGGMTPISLDEPTGRYLSFAEREEI
CCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
ALLRAQGAGVREIAREIKRDPSTVSRELRRNAATRSGTQVYRAGVAQWKAQQAAKRPKPA
HEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
KLAVNPQLREYVQQRLDGSVRGPDGTAVAGPQTKAWNGRNKPHRQDRRWSTAWSPEQIAH
EEEECHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
RLPLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALRVPRARTQNKPQGHV
HCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHCCCCCCCCE
TADVVISKRPAEAADRAVPGHWEGDLIIGAGRSAIATVVERKSRSVMLVHLPRLEGWGLA
EEEEEEECCCHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
PPVKNGPALSGYGAEAMNAALIASLAQLPKQLRQTLTWDRGKELAAHAQFTFDTGTKVFF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCEEEE
ADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAQDLEAVALTLNNRPRKVLGWKTPAEV
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHEEEEEEECCCCCEEECCCCHHHH
FAQQLHSLQQPGVATTD
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQRQFWRLIAQGVSTDDAAAEVGVSTPVATRWFHHAGGMTPISLDEPTGRYLSFAEREEI
CCHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
ALLRAQGAGVREIAREIKRDPSTVSRELRRNAATRSGTQVYRAGVAQWKAQQAAKRPKPA
HEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
KLAVNPQLREYVQQRLDGSVRGPDGTAVAGPQTKAWNGRNKPHRQDRRWSTAWSPEQIAH
EEEECHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHH
RLPLDFPDDESMRISHEAIYQSLFIEGRGALKRELVACLRTGRALRVPRARTQNKPQGHV
HCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCHHCCCCCCCCE
TADVVISKRPAEAADRAVPGHWEGDLIIGAGRSAIATVVERKSRSVMLVHLPRLEGWGLA
EEEEEEECCCHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCEEEEEECCCCCCCCC
PPVKNGPALSGYGAEAMNAALIASLAQLPKQLRQTLTWDRGKELAAHAQFTFDTGTKVFF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEECCCCEEEE
ADPHSPWQRPTNENTNGVLRQYFPKGTDLSRWSAQDLEAVALTLNNRPRKVLGWKTPAEV
ECCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHEEEEEEECCCCCEEECCCCHHHH
FAQQLHSLQQPGVATTD
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1334071 [H]