Click here to switch to the map view.

The map label for this gene is yjiR [H]

Identifier: 119899829

GI number: 119899829

Start: 3883931

End: 3885445

Strand: Direct

Name: yjiR [H]

Synonym: azo3540

Alternate gene names: 119899829

Gene position: 3883931-3885445 (Clockwise)

Preceding gene: 119899827

Following gene: 119899833

Centisome position: 88.75

GC content: 72.34

Gene sequence:

>1515_bases
ATGGTGTTCATGGACCTGTCGCCCCCGCCCGCGCCGCCCGCCGCTACCCAGCCGCTCTACCGCCAGCTGGCGGCCGGCTA
TCGCGCGGCGATCGAGGACGGCACGCTGCGCCCTGGCGACCGCATGCCCTCGGTGCGGGCGCTGATGCAGCGCCACGCAG
TCAGCCTGTCGACCGCGCTCCAACTCTGCCGCCACCTGGAAGACGAGGGCTGGCTGGAGGCGCGGCCGCGCTCCGGCTAC
TTCGTGCGCCGCCGGCTGCGCGCGATAGCGCCCGTCTCGGAACCGGACTCCGCGGGCAGGCCGGATCCCGCCGCCTTCGT
CGGCATCCACGCCACGGTGTCGGCGATCGTCGCCGAGGGCCTGCGCTGCCCGGATGCGCTCAACCTCGGCGGCGCCAGCG
CCGCGCCCGAGCATTACCCCACCGAGGCGCTGAAGAACGCCGCATTGCGCGCACTGCGGCGCAACCCGGAACTGCTCACC
ACGCCCGGCTCGCCCAACGGCAACCCGGCCTTCCGCGCGGTGCTCGCGCGCCGCGCGCTGGAAGCCGGCATCCGCGTCAC
CGCGGACGAGGTCACCGTCACCCACGGCGGCATCGAGGCGGTGAACCTCGCGCTGCGCGCGGTCGCCAATCCGGGCGACA
CGGTGGCGGTGGAATCGCCCACCTTCTTCGGCCTGCTGCAGGTGCTGGAAAGCCTGGGCATGCGCGCGCTGGAAATCCCC
ACCAGCCCGAGCAGCGGCATCTCGGTGGAAGCGCTGGAGCTGGCGATCGAGAGCTACGGCGACATCAAGGCGGTGGTGGT
GGTGCCCAACCTGCAGAACCCGCTCGGCGCGATCATGCCGGACAGTCGCAAGGCCGCCCTAGTGGCGCTGTGCGAGCGCA
ACGGCATTGCGCTGATCGAGGACGACCCCTACCGCGAGATGCACAGCCGGGCGACGCCGCCGAAGGCGCTGAAGGCCTGG
GACCGCAGCGGCAACGTGATCCACTGCGCCTCGCTCAACAAGGTGCTCGCCCCCGGCATGCGGCTGGGCTGGATGGCGGC
GGGGCGCTGGCAGGCGCGGGTGGCGATGCTGAAGTTTGCGCAAAGCCGCCACAACGAGGAATGGTCGCAGCTCGCCGCTG
CCGAGTTCATGGCCACCAGCGCGTACGACCGTCATCTGCAGCGCCTGCGCGAACACCTGCGCGAGCAGCGCGAGCGCATG
GCCGACGCGGTCGCCGCGAGCTTTCCCGCCACCACCCGGCTGAGTGTGCCGGACGGCGGGGCGATGCTGTGGATCGAGCT
GCCGGGCCAGCTATCGTCGCGGCGCCTGTTCGAACACGCCCTGGCGGCCGGCATCCGCATCGCGCCGGGCACGATGTTCT
CCAACTCGGCGCGCTTCGATCACTTCATCCGCCTGGGTTGCGGTCTGCCCTTCACCCCCGCGCTGGCGGCGGCACTGCAG
CGCCTAGGCGGCCTTGCGCATGCGCTGGTGGCCGAAGCGGGCGACAACGCAGCCCGGGCTGCGGCGGCGGGCTGA

Upstream 100 bases:

>100_bases
CCACTACAATGTGAAGCGCAACAGACACGGAATCACCGCCGCTGTTGCGGCCTGTTTCGCCCCGCTCTGTATCTGTCGCC
GCACGCGCGGCGGCGCCATC

Downstream 100 bases:

>100_bases
GCCGGCCCACGGTCGGAACGCCCGCTTCGTCGGCGATATCGCGAGACTCACGCACGCGCCGCGGAGCGCTCTCCGGAAGC
CTTGCGTGGCTTCACCCCTG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 504

Protein sequence:

>504_residues
MVFMDLSPPPAPPAATQPLYRQLAAGYRAAIEDGTLRPGDRMPSVRALMQRHAVSLSTALQLCRHLEDEGWLEARPRSGY
FVRRRLRAIAPVSEPDSAGRPDPAAFVGIHATVSAIVAEGLRCPDALNLGGASAAPEHYPTEALKNAALRALRRNPELLT
TPGSPNGNPAFRAVLARRALEAGIRVTADEVTVTHGGIEAVNLALRAVANPGDTVAVESPTFFGLLQVLESLGMRALEIP
TSPSSGISVEALELAIESYGDIKAVVVVPNLQNPLGAIMPDSRKAALVALCERNGIALIEDDPYREMHSRATPPKALKAW
DRSGNVIHCASLNKVLAPGMRLGWMAAGRWQARVAMLKFAQSRHNEEWSQLAAAEFMATSAYDRHLQRLREHLREQRERM
ADAVAASFPATTRLSVPDGGAMLWIELPGQLSSRRLFEHALAAGIRIAPGTMFSNSARFDHFIRLGCGLPFTPALAAALQ
RLGGLAHALVAEAGDNAARAAAAG

Sequences:

>Translated_504_residues
MVFMDLSPPPAPPAATQPLYRQLAAGYRAAIEDGTLRPGDRMPSVRALMQRHAVSLSTALQLCRHLEDEGWLEARPRSGY
FVRRRLRAIAPVSEPDSAGRPDPAAFVGIHATVSAIVAEGLRCPDALNLGGASAAPEHYPTEALKNAALRALRRNPELLT
TPGSPNGNPAFRAVLARRALEAGIRVTADEVTVTHGGIEAVNLALRAVANPGDTVAVESPTFFGLLQVLESLGMRALEIP
TSPSSGISVEALELAIESYGDIKAVVVVPNLQNPLGAIMPDSRKAALVALCERNGIALIEDDPYREMHSRATPPKALKAW
DRSGNVIHCASLNKVLAPGMRLGWMAAGRWQARVAMLKFAQSRHNEEWSQLAAAEFMATSAYDRHLQRLREHLREQRERM
ADAVAASFPATTRLSVPDGGAMLWIELPGQLSSRRLFEHALAAGIRIAPGTMFSNSARFDHFIRLGCGLPFTPALAAALQ
RLGGLAHALVAEAGDNAARAAAAG
>Mature_504_residues
MVFMDLSPPPAPPAATQPLYRQLAAGYRAAIEDGTLRPGDRMPSVRALMQRHAVSLSTALQLCRHLEDEGWLEARPRSGY
FVRRRLRAIAPVSEPDSAGRPDPAAFVGIHATVSAIVAEGLRCPDALNLGGASAAPEHYPTEALKNAALRALRRNPELLT
TPGSPNGNPAFRAVLARRALEAGIRVTADEVTVTHGGIEAVNLALRAVANPGDTVAVESPTFFGLLQVLESLGMRALEIP
TSPSSGISVEALELAIESYGDIKAVVVVPNLQNPLGAIMPDSRKAALVALCERNGIALIEDDPYREMHSRATPPKALKAW
DRSGNVIHCASLNKVLAPGMRLGWMAAGRWQARVAMLKFAQSRHNEEWSQLAAAEFMATSAYDRHLQRLREHLREQRERM
ADAVAASFPATTRLSVPDGGAMLWIELPGQLSSRRLFEHALAAGIRIAPGTMFSNSARFDHFIRLGCGLPFTPALAAALQ
RLGGLAHALVAEAGDNAARAAAAG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=279, Percent_Identity=24.3727598566308, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI33469970, Length=279, Percent_Identity=24.3727598566308, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1790797, Length=470, Percent_Identity=36.3829787234043, Blast_Score=304, Evalue=9e-84,
Organism=Escherichia coli, GI1787710, Length=466, Percent_Identity=36.0515021459227, Blast_Score=287, Evalue=1e-78,
Organism=Saccharomyces cerevisiae, GI6321236, Length=325, Percent_Identity=24.3076923076923, Blast_Score=76, Evalue=1e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53932; Mature: 53932

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFMDLSPPPAPPAATQPLYRQLAAGYRAAIEDGTLRPGDRMPSVRALMQRHAVSLSTAL
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QLCRHLEDEGWLEARPRSGYFVRRRLRAIAPVSEPDSAGRPDPAAFVGIHATVSAIVAEG
HHHHHCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHC
LRCPDALNLGGASAAPEHYPTEALKNAALRALRRNPELLTTPGSPNGNPAFRAVLARRAL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHH
EAGIRVTADEVTVTHGGIEAVNLALRAVANPGDTVAVESPTFFGLLQVLESLGMRALEIP
HCCCEEEECEEEEECCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECC
TSPSSGISVEALELAIESYGDIKAVVVVPNLQNPLGAIMPDSRKAALVALCERNGIALIE
CCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHEEECCCCEEEEC
DDPYREMHSRATPPKALKAWDRSGNVIHCASLNKVLAPGMRLGWMAAGRWQARVAMLKFA
CCCHHHHHHCCCCHHHHHHHCCCCCEEEEECCHHHHCCCCCCHHEECCHHHHHHHHHHHH
QSRHNEEWSQLAAAEFMATSAYDRHLQRLREHLREQRERMADAVAASFPATTRLSVPDGG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
AMLWIELPGQLSSRRLFEHALAAGIRIAPGTMFSNSARFDHFIRLGCGLPFTPALAAALQ
EEEEEECCCCHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
RLGGLAHALVAEAGDNAARAAAAG
HHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MVFMDLSPPPAPPAATQPLYRQLAAGYRAAIEDGTLRPGDRMPSVRALMQRHAVSLSTAL
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QLCRHLEDEGWLEARPRSGYFVRRRLRAIAPVSEPDSAGRPDPAAFVGIHATVSAIVAEG
HHHHHCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHEEEHHHHHHHHHHHC
LRCPDALNLGGASAAPEHYPTEALKNAALRALRRNPELLTTPGSPNGNPAFRAVLARRAL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHH
EAGIRVTADEVTVTHGGIEAVNLALRAVANPGDTVAVESPTFFGLLQVLESLGMRALEIP
HCCCEEEECEEEEECCCHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCEEEECC
TSPSSGISVEALELAIESYGDIKAVVVVPNLQNPLGAIMPDSRKAALVALCERNGIALIE
CCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHEEECCCCEEEEC
DDPYREMHSRATPPKALKAWDRSGNVIHCASLNKVLAPGMRLGWMAAGRWQARVAMLKFA
CCCHHHHHHCCCCHHHHHHHCCCCCEEEEECCHHHHCCCCCCHHEECCHHHHHHHHHHHH
QSRHNEEWSQLAAAEFMATSAYDRHLQRLREHLREQRERMADAVAASFPATTRLSVPDGG
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
AMLWIELPGQLSSRRLFEHALAAGIRIAPGTMFSNSARFDHFIRLGCGLPFTPALAAALQ
EEEEEECCCCHHHHHHHHHHHHCCCEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
RLGGLAHALVAEAGDNAARAAAAG
HHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]