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The map label for this gene is tapB [H]

Identifier: 119899617

GI number: 119899617

Start: 3667833

End: 3670193

Strand: Reverse

Name: tapB [H]

Synonym: azo3328

Alternate gene names: 119899617

Gene position: 3670193-3667833 (Counterclockwise)

Preceding gene: 119899618

Following gene: 119899616

Centisome position: 83.87

GC content: 65.78

Gene sequence:

>2361_bases
ATGAGCGCAACGCCGGGCAAGGCGCCCGCGGGCGGAGACGTCGCCCGCCGGCTGGCCTTCTTCAAGGGCCTGCAGGCCAT
CACCACGCGAATCCACGCCACCCAGGACATCGACGAGATCATCTTCGAGCTGTCGGCCGACATTTGCGCGCTGTTCGATG
TCGAGCGCCTGTCGATCTACGTGGTGGAGGAGAACGGCACCGTCATTGCCACCAAGGTCAAGACGGGGCTGCAGAGCGTG
CAGAACATCCGGCTGCCGATCGCCGAGAACAGCGTCGCGGGTTATGTCGCCGCTACCGGCAAGCTGCTCAATATCGCGGA
CGTCTACGACGCCGACGAACTTCACGCGATCTCGCCCAAGCTGGAATTCCGCCGCGAGGTGGATGAGGCGACCGGTTATC
GCGCCCGCCAGATGCTGGCGGCGCCCATCACCAACCCCGACAGCGGCAAGCTCGAAGGCGTGATCCAGCTGATCAACCTG
GGCGCGGGCGCGGTGTTTTCCGGCTTCGCCGAGGAAGGGCTGCTCGGCCTGGCGCAGACGCTCGGCGTTGCCTTTGGTCG
TCACCAGGCCCAGGCCACGCTGCAGGCCCGCTCCCGCTTTGACGCACTGGTCGCGGACGGACGCATCACGCCGGAGGAAC
TGGGCAACGCCACGCGCAAGGGGCGCGAGAGCGGCATCCCGGTGGAGGTGGTGCTGATCACCGACTATCGCCTGACCGAG
GCCGAAGTGGGCGAAGCGGCCGCGCGCTTCTACGGCGTGCCTTACGAGCCGTATCGTGCCGACCGCGTGAAGCCGATGGA
CCTGCTGCGCAACATCAAGCGCGACTACGTCCAGCAAAGTCAGTGGCTGCCGCTGGAGGAAACGACCGAAGGCGTGGTCA
TCATGACCACCGACCCGGAGCAGGTGCGTGCTTCCCGCATCGCCGAAAATGTCTTCCCCCGCAAGAAGCTCGCGTTCCGC
GTCACCACCCGCGGTGAATTCGACCGCACCGTGAACCAGTTCTTCGAAGCCCAACTCGACACCAGCTCGGTCAACGACCT
GCTGATGGGCCTGGACGACGACAACGACGAAGGTTCGCTGTCGGACGACGTCAATGCCGCTGCCGACAACGAACTCGTCA
AGCTGGTCAACAAGGTCATTATCGACGCCTACAAGCAGGGCGCATCCGACATCCACGTCGAGCCGCGCCCGGGCAAGGAA
AAGACGCTGATCCGGTTCCGCAAGGACGGCACCCTGGTGCCCTACATCGAGGTGCCGGCGAGCTACCGCAATCCGCTGAT
CACACGCATCAAGATCATGTGCGACCTCGACATCTCCGAGCGTCGCCGCCCGCAGGACGGCAAGATCAAGTTCCGCAAGT
ATGCCCCGCTGGATATCGAACTGCGGGTGGCTACGGTGCCCACCGCCGGCGGCACCGAGGACGTGGTGATGCGCATCCTC
GCTCACAGCGAGCCGCTGCCTCTGGGCGAACTCGCGCTCTCACCGCGCAACCTCGAACGCCTGCGCGAGACCATTACCAA
GCCTTACGGCGTGTTCTTCGTCTGCGGCCCCACCGGCTCCGGCAAGACCACCACGCTGCACTCCATCCTCGGCTACATCA
ACACCCCGGAAACCAAGATCTGGACGATCGAGGATCCGGTCGAAATCACCCAGAAGGGCCTGCGCCAGGTGCAGGTGAAC
CGCAAGGCCGGGCTGGACTTCGCCACCATGATGCGCGCCTTCCTGCGCGCCGACCCGGACGTGATCATGGTCGGCGAGAT
GCGTGACGAGGAAACGGTGTCGGTCGGCATCGAGGCGTCGCTCACCGGCCACCTCGTGCTGTCGACGCTGCACACCAACA
GCGCGCCGGAGTCGGTCATCCGGCTGCTCGACATGGGGATGGATCCGTTCAATTTCTCGGATGCGCTGCTCGGCGTGCTC
GCGCAGCGCCTGGCCAAGCGCTTGTGCCGGCACTGCCGCCAGGCCTATATCGCGGAAGATGCTGAGATCGAGCACCTGCT
CGACGAGTACTGCGCCGACATGCACCTCACCGCCGCCTTCCAGGCCGACCCGGAAGGCGCCCGGGCCGAGGTCCTGTCGC
AATGGCGGGCGCACCATGCCGATGGCGAAGGGCGGTTTACGCTGTATCGCGCGGTGGGCTGCCCGGAGTGCAATCACGGC
TACCGCGGCCGTGTCGGCCTGCATGAGCTGATGGTCGGCACGGAGGCGATCAAGCGCGTGATCCAGGGGCGCGGCCACCT
CGCCCAGATGCTGGCGGTTGCGCTGCAGGACGGCATGCGCACCCTGCGCCAGGACGGCATCGAGAAGGTGCTGGGGGGCA
TCACCGACCTCAAGCAGGTACGCAAGGTCTGCCTGCGCTGA

Upstream 100 bases:

>100_bases
GGCTGATGCATGGCCAGGAGCTTACGTTCTGACGCGGACAGCGTTGCCGACGAGCCGTTAGAATGACGGCCCACCTTCGA
TCGACACGCCACGATCCACC

Downstream 100 bases:

>100_bases
TCGCGGGCCAGCGGCGGGGCGGTTAGAATGCCGCCCTTCCGCTTCTGGAGTTCCCCATGTTCCGCATCGCCCCCAGCATC
CTATCCGCCAACTTTGCGCG

Product: general secretion pathway protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 786; Mature: 785

Protein sequence:

>786_residues
MSATPGKAPAGGDVARRLAFFKGLQAITTRIHATQDIDEIIFELSADICALFDVERLSIYVVEENGTVIATKVKTGLQSV
QNIRLPIAENSVAGYVAATGKLLNIADVYDADELHAISPKLEFRREVDEATGYRARQMLAAPITNPDSGKLEGVIQLINL
GAGAVFSGFAEEGLLGLAQTLGVAFGRHQAQATLQARSRFDALVADGRITPEELGNATRKGRESGIPVEVVLITDYRLTE
AEVGEAAARFYGVPYEPYRADRVKPMDLLRNIKRDYVQQSQWLPLEETTEGVVIMTTDPEQVRASRIAENVFPRKKLAFR
VTTRGEFDRTVNQFFEAQLDTSSVNDLLMGLDDDNDEGSLSDDVNAAADNELVKLVNKVIIDAYKQGASDIHVEPRPGKE
KTLIRFRKDGTLVPYIEVPASYRNPLITRIKIMCDLDISERRRPQDGKIKFRKYAPLDIELRVATVPTAGGTEDVVMRIL
AHSEPLPLGELALSPRNLERLRETITKPYGVFFVCGPTGSGKTTTLHSILGYINTPETKIWTIEDPVEITQKGLRQVQVN
RKAGLDFATMMRAFLRADPDVIMVGEMRDEETVSVGIEASLTGHLVLSTLHTNSAPESVIRLLDMGMDPFNFSDALLGVL
AQRLAKRLCRHCRQAYIAEDAEIEHLLDEYCADMHLTAAFQADPEGARAEVLSQWRAHHADGEGRFTLYRAVGCPECNHG
YRGRVGLHELMVGTEAIKRVIQGRGHLAQMLAVALQDGMRTLRQDGIEKVLGGITDLKQVRKVCLR

Sequences:

>Translated_786_residues
MSATPGKAPAGGDVARRLAFFKGLQAITTRIHATQDIDEIIFELSADICALFDVERLSIYVVEENGTVIATKVKTGLQSV
QNIRLPIAENSVAGYVAATGKLLNIADVYDADELHAISPKLEFRREVDEATGYRARQMLAAPITNPDSGKLEGVIQLINL
GAGAVFSGFAEEGLLGLAQTLGVAFGRHQAQATLQARSRFDALVADGRITPEELGNATRKGRESGIPVEVVLITDYRLTE
AEVGEAAARFYGVPYEPYRADRVKPMDLLRNIKRDYVQQSQWLPLEETTEGVVIMTTDPEQVRASRIAENVFPRKKLAFR
VTTRGEFDRTVNQFFEAQLDTSSVNDLLMGLDDDNDEGSLSDDVNAAADNELVKLVNKVIIDAYKQGASDIHVEPRPGKE
KTLIRFRKDGTLVPYIEVPASYRNPLITRIKIMCDLDISERRRPQDGKIKFRKYAPLDIELRVATVPTAGGTEDVVMRIL
AHSEPLPLGELALSPRNLERLRETITKPYGVFFVCGPTGSGKTTTLHSILGYINTPETKIWTIEDPVEITQKGLRQVQVN
RKAGLDFATMMRAFLRADPDVIMVGEMRDEETVSVGIEASLTGHLVLSTLHTNSAPESVIRLLDMGMDPFNFSDALLGVL
AQRLAKRLCRHCRQAYIAEDAEIEHLLDEYCADMHLTAAFQADPEGARAEVLSQWRAHHADGEGRFTLYRAVGCPECNHG
YRGRVGLHELMVGTEAIKRVIQGRGHLAQMLAVALQDGMRTLRQDGIEKVLGGITDLKQVRKVCLR
>Mature_785_residues
SATPGKAPAGGDVARRLAFFKGLQAITTRIHATQDIDEIIFELSADICALFDVERLSIYVVEENGTVIATKVKTGLQSVQ
NIRLPIAENSVAGYVAATGKLLNIADVYDADELHAISPKLEFRREVDEATGYRARQMLAAPITNPDSGKLEGVIQLINLG
AGAVFSGFAEEGLLGLAQTLGVAFGRHQAQATLQARSRFDALVADGRITPEELGNATRKGRESGIPVEVVLITDYRLTEA
EVGEAAARFYGVPYEPYRADRVKPMDLLRNIKRDYVQQSQWLPLEETTEGVVIMTTDPEQVRASRIAENVFPRKKLAFRV
TTRGEFDRTVNQFFEAQLDTSSVNDLLMGLDDDNDEGSLSDDVNAAADNELVKLVNKVIIDAYKQGASDIHVEPRPGKEK
TLIRFRKDGTLVPYIEVPASYRNPLITRIKIMCDLDISERRRPQDGKIKFRKYAPLDIELRVATVPTAGGTEDVVMRILA
HSEPLPLGELALSPRNLERLRETITKPYGVFFVCGPTGSGKTTTLHSILGYINTPETKIWTIEDPVEITQKGLRQVQVNR
KAGLDFATMMRAFLRADPDVIMVGEMRDEETVSVGIEASLTGHLVLSTLHTNSAPESVIRLLDMGMDPFNFSDALLGVLA
QRLAKRLCRHCRQAYIAEDAEIEHLLDEYCADMHLTAAFQADPEGARAEVLSQWRAHHADGEGRFTLYRAVGCPECNHGY
RGRVGLHELMVGTEAIKRVIQGRGHLAQMLAVALQDGMRTLRQDGIEKVLGGITDLKQVRKVCLR

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=466, Percent_Identity=38.8412017167382, Blast_Score=286, Evalue=3e-78,
Organism=Escherichia coli, GI1786296, Length=411, Percent_Identity=38.1995133819951, Blast_Score=262, Evalue=8e-71,
Organism=Escherichia coli, GI87082188, Length=154, Percent_Identity=43.5064935064935, Blast_Score=112, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013374
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 86834; Mature: 86703

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATPGKAPAGGDVARRLAFFKGLQAITTRIHATQDIDEIIFELSADICALFDVERLSIY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEEE
VVEENGTVIATKVKTGLQSVQNIRLPIAENSVAGYVAATGKLLNIADVYDADELHAISPK
EEECCCCEEEEHHHHHHHHHHHCCCEEECCCCCEEEEECCCEEEHHHHCCCCCHHCCCCH
LEFRREVDEATGYRARQMLAAPITNPDSGKLEGVIQLINLGAGAVFSGFAEEGLLGLAQT
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LGVAFGRHQAQATLQARSRFDALVADGRITPEELGNATRKGRESGIPVEVVLITDYRLTE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCCCCEEEEEEECCCCCH
AEVGEAAARFYGVPYEPYRADRVKPMDLLRNIKRDYVQQSQWLPLEETTEGVVIMTTDPE
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHH
QVRASRIAENVFPRKKLAFRVTTRGEFDRTVNQFFEAQLDTSSVNDLLMGLDDDNDEGSL
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCC
SDDVNAAADNELVKLVNKVIIDAYKQGASDIHVEPRPGKEKTLIRFRKDGTLVPYIEVPA
CCCCCHHCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCC
SYRNPLITRIKIMCDLDISERRRPQDGKIKFRKYAPLDIELRVATVPTAGGTEDVVMRIL
HHCCCCEEEEEEEEECCHHHCCCCCCCCEEEEEECCCEEEEEEEEECCCCCHHHHHHHHH
AHSEPLPLGELALSPRNLERLRETITKPYGVFFVCGPTGSGKTTTLHSILGYINTPETKI
HCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
WTIEDPVEITQKGLRQVQVNRKAGLDFATMMRAFLRADPDVIMVGEMRDEETVSVGIEAS
EEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEC
LTGHLVLSTLHTNSAPESVIRLLDMGMDPFNFSDALLGVLAQRLAKRLCRHCRQAYIAED
CCCEEEEEEHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AEIEHLLDEYCADMHLTAAFQADPEGARAEVLSQWRAHHADGEGRFTLYRAVGCPECNHG
HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
YRGRVGLHELMVGTEAIKRVIQGRGHLAQMLAVALQDGMRTLRQDGIEKVLGGITDLKQV
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RKVCLR
HHHHCC
>Mature Secondary Structure 
SATPGKAPAGGDVARRLAFFKGLQAITTRIHATQDIDEIIFELSADICALFDVERLSIY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEEE
VVEENGTVIATKVKTGLQSVQNIRLPIAENSVAGYVAATGKLLNIADVYDADELHAISPK
EEECCCCEEEEHHHHHHHHHHHCCCEEECCCCCEEEEECCCEEEHHHHCCCCCHHCCCCH
LEFRREVDEATGYRARQMLAAPITNPDSGKLEGVIQLINLGAGAVFSGFAEEGLLGLAQT
HHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LGVAFGRHQAQATLQARSRFDALVADGRITPEELGNATRKGRESGIPVEVVLITDYRLTE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCCCCEEEEEEECCCCCH
AEVGEAAARFYGVPYEPYRADRVKPMDLLRNIKRDYVQQSQWLPLEETTEGVVIMTTDPE
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHH
QVRASRIAENVFPRKKLAFRVTTRGEFDRTVNQFFEAQLDTSSVNDLLMGLDDDNDEGSL
HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCC
SDDVNAAADNELVKLVNKVIIDAYKQGASDIHVEPRPGKEKTLIRFRKDGTLVPYIEVPA
CCCCCHHCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEECCCCEEEEEECCC
SYRNPLITRIKIMCDLDISERRRPQDGKIKFRKYAPLDIELRVATVPTAGGTEDVVMRIL
HHCCCCEEEEEEEEECCHHHCCCCCCCCEEEEEECCCEEEEEEEEECCCCCHHHHHHHHH
AHSEPLPLGELALSPRNLERLRETITKPYGVFFVCGPTGSGKTTTLHSILGYINTPETKI
HCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
WTIEDPVEITQKGLRQVQVNRKAGLDFATMMRAFLRADPDVIMVGEMRDEETVSVGIEAS
EEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEC
LTGHLVLSTLHTNSAPESVIRLLDMGMDPFNFSDALLGVLAQRLAKRLCRHCRQAYIAED
CCCEEEEEEHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AEIEHLLDEYCADMHLTAAFQADPEGARAEVLSQWRAHHADGEGRFTLYRAVGCPECNHG
HHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
YRGRVGLHELMVGTEAIKRVIQGRGHLAQMLAVALQDGMRTLRQDGIEKVLGGITDLKQV
CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RKVCLR
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]