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The map label for this gene is cpdP [H]

Identifier: 119899618

GI number: 119899618

Start: 3670262

End: 3670960

Strand: Reverse

Name: cpdP [H]

Synonym: azo3329

Alternate gene names: 119899618

Gene position: 3670960-3670262 (Counterclockwise)

Preceding gene: 119899619

Following gene: 119899617

Centisome position: 83.89

GC content: 63.66

Gene sequence:

>699_bases
GTGGACGATGACATCCTCATCGACTGCGGCACCGGCGTGGGCGATCTGGAATACGGTCAGCTCAAGCGCATCGATCACAT
CTTCATCACCCACGCGCACCTTGATCACATCGCGATGATTCCGCTGCTGATCGATTCGGTGGGTGAGGCGCGGGGCGTTC
CGGTTACCGTGTATGGGTCGGCGGAGACCATCCGGATCCTGCGTTCGCACATCTTCAACTGGTTGATCTGGCCAGACTTT
TCCGCAATCCCCGACCGCCATCGGCCCTTCCTGCGTTTCCAGGTGATCAAGGTGGGCGAGACCGTGCGGCTGGCGCGGGG
CGCGGTGACGGTGATGCCTGCGCACCACACCGTGCCTGCCGTGGCCTATTGCCTGGACAGCGGCGACGGGCAGTTGGTCT
ATTCCGGCGACACCGCGTATTGCCCGGAACTCATCGCCGCGATCAACCGGACGCCGCATCTGCGCCACCTGATTGTCGAG
ACCGCGTTTCCCAACGAGCAGCAAGGTCTCGCGCTCGCATCCCGGCACCTGTGCCCGGCGATGCTGGGGGCGATGCTCGA
CGAAATCACGGTGACGCCCGAGGTCCACATCAGTCACCTGAAGCCCGGTGTCGACGACCGCATCATGGACCAGTTGTCGA
GCTATCGCGGGCCTTTGCGCCCGCGCCGGCTGATGCATGGCCAGGAGCTTACGTTCTGA

Upstream 100 bases:

>100_bases
TTCGGAACAGGTTGCCGGTCAGTAATTCGATATGAAGCTCAGGGTGCTCGGATGTAGCGGAGGGATCGGCGGCAGGACGT
CGCGGACAACTTCGTTTCTC

Downstream 100 bases:

>100_bases
CGCGGACAGCGTTGCCGACGAGCCGTTAGAATGACGGCCCACCTTCGATCGACACGCCACGATCCACCATGAGCGCAACG
CCGGGCAAGGCGCCCGCGGG

Product: putative 3',5'-cyclic-nucleotide phosphodiesterase

Products: NA

Alternate protein names: 3':5'-CNP; PDEase [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MDDDILIDCGTGVGDLEYGQLKRIDHIFITHAHLDHIAMIPLLIDSVGEARGVPVTVYGSAETIRILRSHIFNWLIWPDF
SAIPDRHRPFLRFQVIKVGETVRLARGAVTVMPAHHTVPAVAYCLDSGDGQLVYSGDTAYCPELIAAINRTPHLRHLIVE
TAFPNEQQGLALASRHLCPAMLGAMLDEITVTPEVHISHLKPGVDDRIMDQLSSYRGPLRPRRLMHGQELTF

Sequences:

>Translated_232_residues
MDDDILIDCGTGVGDLEYGQLKRIDHIFITHAHLDHIAMIPLLIDSVGEARGVPVTVYGSAETIRILRSHIFNWLIWPDF
SAIPDRHRPFLRFQVIKVGETVRLARGAVTVMPAHHTVPAVAYCLDSGDGQLVYSGDTAYCPELIAAINRTPHLRHLIVE
TAFPNEQQGLALASRHLCPAMLGAMLDEITVTPEVHISHLKPGVDDRIMDQLSSYRGPLRPRRLMHGQELTF
>Mature_232_residues
MDDDILIDCGTGVGDLEYGQLKRIDHIFITHAHLDHIAMIPLLIDSVGEARGVPVTVYGSAETIRILRSHIFNWLIWPDF
SAIPDRHRPFLRFQVIKVGETVRLARGAVTVMPAHHTVPAVAYCLDSGDGQLVYSGDTAYCPELIAAINRTPHLRHLIVE
TAFPNEQQGLALASRHLCPAMLGAMLDEITVTPEVHISHLKPGVDDRIMDQLSSYRGPLRPRRLMHGQELTF

Specific function: Unknown

COG id: COG5212

COG function: function code T; Low-affinity cAMP phosphodiesterase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cAMP phosphodiesterase class-II family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000396 [H]

Pfam domain/function: PF02112 PDEase_II [H]

EC number: =3.1.4.17 [H]

Molecular weight: Translated: 25846; Mature: 25846

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDDILIDCGTGVGDLEYGQLKRIDHIFITHAHLDHIAMIPLLIDSVGEARGVPVTVYGS
CCCCEEEECCCCCCCCCCHHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEECC
AETIRILRSHIFNWLIWPDFSAIPDRHRPFLRFQVIKVGETVRLARGAVTVMPAHHTVPA
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEEECCCCEEHHCCEEEEEECCCCHHH
VAYCLDSGDGQLVYSGDTAYCPELIAAINRTPHLRHLIVETAFPNEQQGLALASRHLCPA
HHHEEECCCCEEEECCCCCHHHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHH
MLGAMLDEITVTPEVHISHLKPGVDDRIMDQLSSYRGPLRPRRLMHGQELTF
HHHHHHHHEECCCCEEHCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MDDDILIDCGTGVGDLEYGQLKRIDHIFITHAHLDHIAMIPLLIDSVGEARGVPVTVYGS
CCCCEEEECCCCCCCCCCHHHHHHHEEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEECC
AETIRILRSHIFNWLIWPDFSAIPDRHRPFLRFQVIKVGETVRLARGAVTVMPAHHTVPA
HHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEEEEEECCCCEEHHCCEEEEEECCCCHHH
VAYCLDSGDGQLVYSGDTAYCPELIAAINRTPHLRHLIVETAFPNEQQGLALASRHLCPA
HHHEEECCCCEEEECCCCCHHHHHHHHHCCCCCHHEEEEECCCCCCCCCHHHHHHHHHHH
MLGAMLDEITVTPEVHISHLKPGVDDRIMDQLSSYRGPLRPRRLMHGQELTF
HHHHHHHHEECCCCEEHCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]