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The map label for this gene is rpe [H]

Identifier: 119899616

GI number: 119899616

Start: 3667075

End: 3667776

Strand: Reverse

Name: rpe [H]

Synonym: azo3327

Alternate gene names: 119899616

Gene position: 3667776-3667075 (Counterclockwise)

Preceding gene: 119899617

Following gene: 119899615

Centisome position: 83.81

GC content: 66.38

Gene sequence:

>702_bases
ATGTTCCGCATCGCCCCCAGCATCCTATCCGCCAACTTTGCGCGACTCGGCGAGGAAGTGAGCCAGGTCGTGGCGTCCGG
CGCGGACTGGATCCACTTCGACGTGATGGACAACCATTACGTCCCCAATCTCACCATCGGCCCGCTGGTGTGCGAGGCCT
TGCGCCCGGTCACCACCGCGCCGATCGACGTCCATCTGATGGTGAAGCCGGTCGACCGCATCATTCCCGACTTCGCCAAG
GCCGGCGCCAACATCATCACCTTCCATCCCGAGGCTTCCGAGCACATCGACCGCAGTCTCGGCCTGATCCGTGACTCCGG
CTGCCAGGCCGGCCTGGTGTTCAACCCAGCCACCCCGCTGCACTACATGGACCACGTCATGGACAAGCTCGACGTGGTGC
TGCTGATGAGCGTAAACCCCGGTTTCGGCGGGCAGAAGTTCATTCCCGAAACGCTCAACAAGCTGCGTGCCGCGCGTGCA
AGGCTCGACGCCTACGAGGCGCAGAGCGGCCGCCGCATCCTGCTGGAGATCGACGGCGGCGTGAAGGTGGACAACATCGC
GGAGATCGCCCGTGCGGGCGCGGACACCTTCGTCGCGGGTTCCGCCGTGTTCGGCGCGGGCAAGGACAGCGACCCCAACC
GCTACGACGGCGTGATCGGCGCGCTGCGTGCCGAGCTTGCCGCGGTCGGCACCCCGGGCTGA

Upstream 100 bases:

>100_bases
GCATCACCGACCTCAAGCAGGTACGCAAGGTCTGCCTGCGCTGATCGCGGGCCAGCGGCGGGGCGGTTAGAATGCCGCCC
TTCCGCTTCTGGAGTTCCCC

Downstream 100 bases:

>100_bases
GCGAACGCGATGACGCATTTTCCCGCCCGCGCAGTGCTGTTCGACCTCGACGGCACGCTGCTCGACACCATCGGCGACCT
CGCCGAAGCAGCCAACCGCA

Product: putative ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MFRIAPSILSANFARLGEEVSQVVASGADWIHFDVMDNHYVPNLTIGPLVCEALRPVTTAPIDVHLMVKPVDRIIPDFAK
AGANIITFHPEASEHIDRSLGLIRDSGCQAGLVFNPATPLHYMDHVMDKLDVVLLMSVNPGFGGQKFIPETLNKLRAARA
RLDAYEAQSGRRILLEIDGGVKVDNIAEIARAGADTFVAGSAVFGAGKDSDPNRYDGVIGALRAELAAVGTPG

Sequences:

>Translated_233_residues
MFRIAPSILSANFARLGEEVSQVVASGADWIHFDVMDNHYVPNLTIGPLVCEALRPVTTAPIDVHLMVKPVDRIIPDFAK
AGANIITFHPEASEHIDRSLGLIRDSGCQAGLVFNPATPLHYMDHVMDKLDVVLLMSVNPGFGGQKFIPETLNKLRAARA
RLDAYEAQSGRRILLEIDGGVKVDNIAEIARAGADTFVAGSAVFGAGKDSDPNRYDGVIGALRAELAAVGTPG
>Mature_233_residues
MFRIAPSILSANFARLGEEVSQVVASGADWIHFDVMDNHYVPNLTIGPLVCEALRPVTTAPIDVHLMVKPVDRIIPDFAK
AGANIITFHPEASEHIDRSLGLIRDSGCQAGLVFNPATPLHYMDHVMDKLDVVLLMSVNPGFGGQKFIPETLNKLRAARA
RLDAYEAQSGRRILLEIDGGVKVDNIAEIARAGADTFVAGSAVFGAGKDSDPNRYDGVIGALRAELAAVGTPG

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=223, Percent_Identity=38.5650224215247, Blast_Score=150, Evalue=8e-37,
Organism=Homo sapiens, GI219879828, Length=223, Percent_Identity=37.6681614349776, Blast_Score=142, Evalue=2e-34,
Organism=Homo sapiens, GI24307923, Length=178, Percent_Identity=32.5842696629214, Blast_Score=90, Evalue=2e-18,
Organism=Escherichia coli, GI1789788, Length=229, Percent_Identity=68.9956331877729, Blast_Score=316, Evalue=1e-87,
Organism=Escherichia coli, GI1790523, Length=211, Percent_Identity=36.4928909952607, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1790754, Length=204, Percent_Identity=29.9019607843137, Blast_Score=91, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=40.2777777777778, Blast_Score=151, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6322341, Length=237, Percent_Identity=37.5527426160338, Blast_Score=154, Evalue=9e-39,
Organism=Drosophila melanogaster, GI24586301, Length=209, Percent_Identity=36.8421052631579, Blast_Score=140, Evalue=7e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 24923; Mature: 24923

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRIAPSILSANFARLGEEVSQVVASGADWIHFDVMDNHYVPNLTIGPLVCEALRPVTTA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCC
PIDVHLMVKPVDRIIPDFAKAGANIITFHPEASEHIDRSLGLIRDSGCQAGLVFNPATPL
CEEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEECCCCHH
HYMDHVMDKLDVVLLMSVNPGFGGQKFIPETLNKLRAARARLDAYEAQSGRRILLEIDGG
HHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
VKVDNIAEIARAGADTFVAGSAVFGAGKDSDPNRYDGVIGALRAELAAVGTPG
CCHHHHHHHHHCCCCCEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFRIAPSILSANFARLGEEVSQVVASGADWIHFDVMDNHYVPNLTIGPLVCEALRPVTTA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCC
PIDVHLMVKPVDRIIPDFAKAGANIITFHPEASEHIDRSLGLIRDSGCQAGLVFNPATPL
CEEEEEEECCHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEECCCCHH
HYMDHVMDKLDVVLLMSVNPGFGGQKFIPETLNKLRAARARLDAYEAQSGRRILLEIDGG
HHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
VKVDNIAEIARAGADTFVAGSAVFGAGKDSDPNRYDGVIGALRAELAAVGTPG
CCHHHHHHHHHCCCCCEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1429456 [H]