| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is pleD [H]
Identifier: 119899470
GI number: 119899470
Start: 3491000
End: 3492196
Strand: Reverse
Name: pleD [H]
Synonym: azo3180
Alternate gene names: 119899470
Gene position: 3492196-3491000 (Counterclockwise)
Preceding gene: 119899471
Following gene: 119899469
Centisome position: 79.8
GC content: 65.25
Gene sequence:
>1197_bases ATGAGCACTGAGGACGGCACGACCGCCATGAGCAAGGTGCTCGTCGTGGACGATTCGCGCATGGTGCGCGCATCGCTGAT CAAGCATCTGCGTGGCCGTTTCGAGGTCCGCGAAGAGGCCGACGGCGAGGCTGGCTGGGAAAGCCTCCTGGTGGACCCGT CGATCCAGCTGGTGCTCACCGACATCGGGATGCCGAGGCTGGACGGCTTCGGCCTGCTGGAGCGCATCCGCGGCTCCAAG GTGGCGCGTGTCCACGAGGTGCCGGTCATCATCATCTCGGGTGACGAGGACGATGCGGCGCGCGAACGCGCGTTGAAGCT GGGGGCCAACGACTTCATCACCAAGGGCATCGGCGGCGTCGAACTGATCGCGCGGCTGGAGTCGCTGTCGCGGCTGGTCG AAACCCGGCGCGAGCTGGAGGCCAGCCGCGCCGCGCTCGCCACCCAAAGCCCGGTGGACCCGGTTTCCGGCCTGAGCACC GAGGCCTACATGAACTGGCACGGCGAGCAGGAGATCGCGCTCGCCCGGCGCCACCAGGGCGACATCTCGGCGATGGTCAT CGAGATCGATCATTACGAGCAACTGATCGAATGGCACGGTGCCCACGTCGCGCAGCTGATCACCCGCAAGCTGTCGAAGA TCCTGTCGAGCAAGGTGCGCAAGGAAGACACCGTGGCCCAGCTTGCCCCCGCGCAGTTTGCGGTGCTGTCGCCGAGCACC GACCCGATGGGATGCTGCGCCTTCGCACTGCGTATGCAGCGCGCGATGGAAAAGCTGGTGATGACCTACCGCGAGGAGCG GATCCGCATCAGCGTCACCATCGGTGTGGCCAGTTCTTCGATCGACGGCATGCAGACCGTCAATCACCTGATCGGCGTGG CGGCCAGCCGTGTCGATACAGGCAAGGCCGCAGGCGGCAATCGCGTGGTCAATGACCAGGGCGAAGTCGACCAGGCGGTC GTCGACCGTTACATGAAGCAGGTAATCAGCATCGACCATGCCCTGCTTCAGCTCCGGCTGGGAGCCGCCGACGAGGTGGC CGAACGCCTGCCGGAGGTCATCCACACCCTGTTCCCGTTGCTCGAGTTGCTAGAATCCCGGCTTCATTGCGGGATCCCGC TCGGGGAGCTTAAAAAACACGATAAGGGCGCAGGGGCCGGCGATGACGAAGCGGGGGCAACCCATACCCCCGAATAG
Upstream 100 bases:
>100_bases CTGCCGGGCGCGTTCGAGGCCTTCATCCGGGGGCAGGTCAAGGGCCGGACGGTCGTCCGGATCGGCGCCTGAGTGCAGCC GGGTTGTGGAGAGCGTTTTG
Downstream 100 bases:
>100_bases CAGCAATAGCAAACGTGGCGGGCGGCCGCGCTGGGGAGCGCCGGGCGCCGTTGCGTCAATCAAAAATGTAGGGAATCTGG AAGGGAGAGGATTTGATGAG
Product: putative response regulator protein
Products: NA
Alternate protein names: Stalked cell differentiation-controlling protein; Diguanylate cyclase; DGC; Diguanylate kinase [H]
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MSTEDGTTAMSKVLVVDDSRMVRASLIKHLRGRFEVREEADGEAGWESLLVDPSIQLVLTDIGMPRLDGFGLLERIRGSK VARVHEVPVIIISGDEDDAARERALKLGANDFITKGIGGVELIARLESLSRLVETRRELEASRAALATQSPVDPVSGLST EAYMNWHGEQEIALARRHQGDISAMVIEIDHYEQLIEWHGAHVAQLITRKLSKILSSKVRKEDTVAQLAPAQFAVLSPST DPMGCCAFALRMQRAMEKLVMTYREERIRISVTIGVASSSIDGMQTVNHLIGVAASRVDTGKAAGGNRVVNDQGEVDQAV VDRYMKQVISIDHALLQLRLGAADEVAERLPEVIHTLFPLLELLESRLHCGIPLGELKKHDKGAGAGDDEAGATHTPE
Sequences:
>Translated_398_residues MSTEDGTTAMSKVLVVDDSRMVRASLIKHLRGRFEVREEADGEAGWESLLVDPSIQLVLTDIGMPRLDGFGLLERIRGSK VARVHEVPVIIISGDEDDAARERALKLGANDFITKGIGGVELIARLESLSRLVETRRELEASRAALATQSPVDPVSGLST EAYMNWHGEQEIALARRHQGDISAMVIEIDHYEQLIEWHGAHVAQLITRKLSKILSSKVRKEDTVAQLAPAQFAVLSPST DPMGCCAFALRMQRAMEKLVMTYREERIRISVTIGVASSSIDGMQTVNHLIGVAASRVDTGKAAGGNRVVNDQGEVDQAV VDRYMKQVISIDHALLQLRLGAADEVAERLPEVIHTLFPLLELLESRLHCGIPLGELKKHDKGAGAGDDEAGATHTPE >Mature_397_residues STEDGTTAMSKVLVVDDSRMVRASLIKHLRGRFEVREEADGEAGWESLLVDPSIQLVLTDIGMPRLDGFGLLERIRGSKV ARVHEVPVIIISGDEDDAARERALKLGANDFITKGIGGVELIARLESLSRLVETRRELEASRAALATQSPVDPVSGLSTE AYMNWHGEQEIALARRHQGDISAMVIEIDHYEQLIEWHGAHVAQLITRKLSKILSSKVRKEDTVAQLAPAQFAVLSPSTD PMGCCAFALRMQRAMEKLVMTYREERIRISVTIGVASSSIDGMQTVNHLIGVAASRVDTGKAAGGNRVVNDQGEVDQAVV DRYMKQVISIDHALLQLRLGAADEVAERLPEVIHTLFPLLELLESRLHCGIPLGELKKHDKGAGAGDDEAGATHTPE
Specific function: Catalyzes the condensation of two GTP molecules to the cyclic dinucleotide di-GMP (c-di-GMP), which acts as a secondary messenger [H]
COG id: COG3706
COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain
Gene ontology:
Cell location: Cytoplasm. Note=Phosphorylated PleD localizes to the differentiating pole [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 response regulatory domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR011006 - InterPro: IPR000160 - InterPro: IPR001789 [H]
Pfam domain/function: PF00990 GGDEF; PF00072 Response_reg [H]
EC number: =2.7.7.65 [H]
Molecular weight: Translated: 43432; Mature: 43301
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEDGTTAMSKVLVVDDSRMVRASLIKHLRGRFEVREEADGEAGWESLLVDPSIQLVLT CCCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCEEEEE DIGMPRLDGFGLLERIRGSKVARVHEVPVIIISGDEDDAARERALKLGANDFITKGIGGV ECCCCCCCCHHHHHHHCCCCCEEEECCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCCHH ELIARLESLSRLVETRRELEASRAALATQSPVDPVSGLSTEAYMNWHGEQEIALARRHQG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCC DISAMVIEIDHYEQLIEWHGAHVAQLITRKLSKILSSKVRKEDTVAQLAPAQFAVLSPST CCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC DPMGCCAFALRMQRAMEKLVMTYREERIRISVTIGVASSSIDGMQTVNHLIGVAASRVDT CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC GKAAGGNRVVNDQGEVDQAVVDRYMKQVISIDHALLQLRLGAADEVAERLPEVIHTLFPL CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LELLESRLHCGIPLGELKKHDKGAGAGDDEAGATHTPE HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STEDGTTAMSKVLVVDDSRMVRASLIKHLRGRFEVREEADGEAGWESLLVDPSIQLVLT CCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCEEEEE DIGMPRLDGFGLLERIRGSKVARVHEVPVIIISGDEDDAARERALKLGANDFITKGIGGV ECCCCCCCCHHHHHHHCCCCCEEEECCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCCHH ELIARLESLSRLVETRRELEASRAALATQSPVDPVSGLSTEAYMNWHGEQEIALARRHQG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCC DISAMVIEIDHYEQLIEWHGAHVAQLITRKLSKILSSKVRKEDTVAQLAPAQFAVLSPST CCEEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCC DPMGCCAFALRMQRAMEKLVMTYREERIRISVTIGVASSSIDGMQTVNHLIGVAASRVDT CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC GKAAGGNRVVNDQGEVDQAVVDRYMKQVISIDHALLQLRLGAADEVAERLPEVIHTLFPL CCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LELLESRLHCGIPLGELKKHDKGAGAGDDEAGATHTPE HHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA