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The map label for this gene is rumC [H]

Identifier: 119899077

GI number: 119899077

Start: 3068980

End: 3070395

Strand: Reverse

Name: rumC [H]

Synonym: azo2787

Alternate gene names: 119899077

Gene position: 3070395-3068980 (Counterclockwise)

Preceding gene: 119899078

Following gene: 119899076

Centisome position: 70.16

GC content: 70.62

Gene sequence:

>1416_bases
ATGATCGACATCCCCTTGCAGATGACCCTGGCGGCACTCGCTGGGTTGGGCGCGGGCTTCGTGCTCGCCTGGCTGCTGCA
GCGCGGGCGCGGTGCCCAGGCGCTGGAACGCGCGCGGCTGGAGGCGGAGGCGGCGCTCGCCCCGCTGCGCGAACGGGCGC
GCCTGCTGGAGGCGGAGCGCGAGGCGTTGCGCGTGGAGCAGGCGGACGTGCTGGCGCGCGCGGAGGGCTGGCGCGAGGCG
CTGGAGAAGACCCGCGCCGAACGCGCCGTGCTGGCCGAGCGCCTGCTCGCCGAGCGGCGCAATGCGGAAGAAAAGATCGC
CCTGCTGCAGCAGGCGCGCGAGGCGCTGAGCGACCAGTTCAAGGCGCTCGCGGCCGACATCCTCGAAGAGAAATCGAAGC
GCTTCACCGAGCAGAACCAGACCAACATCGGCCAGTTGCTCGAGCCGCTGCGGGAGCGTCTGCAGGCGTTCCAGGGCACC
GTCGAGCAGGTCTACGTGCAGGAAGGCAAGGACCGCAGCGCGCTGGCCGAGCAGGTGCGGCAGCTGATGGAACTCAACCG
CGCGCTCGGCGAGGACGCGAAGAACCTGACCCGGGCGCTCAAGGGGTCGGTGAAGGCGCAGGGCAACTGGGGCGAGCTGG
TGCTGGAGCGCGTGCTGGAAGCCTCCGGCCTGCGCAAGGGGGTGGAGTACGACACCCAGCAGAGCCATGCGCGCGAGGAC
GGCAGCCGGGCGCAGCCGGACGTGGTGATCCACCTGCCTGAAGACCGCCACCTGGTGGTGGATGCCAAGGTCTCGCTTAC
CGCCTACGAAGCCTGCGTGGTGGCCGAGGACGAGGCCGCGCGCCAGCTGGCGGTGCGGCGCCATCTGGAATCGGTGCGGG
CCCACATCAAGGGGCTGGCGGAGCGCAATTACCAGCAGATCCACGGCGTCGGCTCGCTCGATTTCGTGCTGATGTTCGTC
CCGATCGAGCCCGCCTTCATGCTCGCGGTGACGCACGACGACGCGCTGTTCATGGATGCGTGGCAGAAGAACGTGCTGCT
GGTCGGGCCGTCTACGCTGCTGTTCGTGGTCCGCACGGTCGCCCACCTGTGGCGGCAGGAGGGGCAGGGCCGCAATGCGC
AGGAGATCGCCCGCCGCGGCGGCGAGCTGTACGACAAGCTGGTCGGCTTTGTCGACGACATGGATGCGCTCGGCAATCGC
CTGGCTCAGGCGCAGAAATCCTTCGACGCCGCCTACGGCAAGTTCGCGCGCGGCCGTGGCAACCTGGTGCGGCAGGCCGA
AATGCTGCGCGAACTCGGCGTAACGCCGGCCAAGGCGTTGTCGCCCGCGCTGGTCGAGCGCGCGCTGGAAGACGACGCGG
CGGATGCGGCGCCGGTGCGCCCGGCGCTGCGCGTGGCGGGCGACGAGGCGGGCTGA

Upstream 100 bases:

>100_bases
CTGCGCCGCGTAGCGCAATCACCGACGCCCGCCGCCAGCAATGCCGGCGGGCGTTGCGTTTGTTGCCGCCGGCCGGCGGG
GCGGAACCGATGGTGGCGGC

Downstream 100 bases:

>100_bases
CGCGGTCGGTCCCCGAGCGGCTGGCGGCACGTCCCGGTTCGTCCTGCACACAGCATGCGCAAGATCATCCACTGCGACTG
CGATTGCTTCTACGCTGCGG

Product: putative RumC-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MIDIPLQMTLAALAGLGAGFVLAWLLQRGRGAQALERARLEAEAALAPLRERARLLEAEREALRVEQADVLARAEGWREA
LEKTRAERAVLAERLLAERRNAEEKIALLQQAREALSDQFKALAADILEEKSKRFTEQNQTNIGQLLEPLRERLQAFQGT
VEQVYVQEGKDRSALAEQVRQLMELNRALGEDAKNLTRALKGSVKAQGNWGELVLERVLEASGLRKGVEYDTQQSHARED
GSRAQPDVVIHLPEDRHLVVDAKVSLTAYEACVVAEDEAARQLAVRRHLESVRAHIKGLAERNYQQIHGVGSLDFVLMFV
PIEPAFMLAVTHDDALFMDAWQKNVLLVGPSTLLFVVRTVAHLWRQEGQGRNAQEIARRGGELYDKLVGFVDDMDALGNR
LAQAQKSFDAAYGKFARGRGNLVRQAEMLRELGVTPAKALSPALVERALEDDAADAAPVRPALRVAGDEAG

Sequences:

>Translated_471_residues
MIDIPLQMTLAALAGLGAGFVLAWLLQRGRGAQALERARLEAEAALAPLRERARLLEAEREALRVEQADVLARAEGWREA
LEKTRAERAVLAERLLAERRNAEEKIALLQQAREALSDQFKALAADILEEKSKRFTEQNQTNIGQLLEPLRERLQAFQGT
VEQVYVQEGKDRSALAEQVRQLMELNRALGEDAKNLTRALKGSVKAQGNWGELVLERVLEASGLRKGVEYDTQQSHARED
GSRAQPDVVIHLPEDRHLVVDAKVSLTAYEACVVAEDEAARQLAVRRHLESVRAHIKGLAERNYQQIHGVGSLDFVLMFV
PIEPAFMLAVTHDDALFMDAWQKNVLLVGPSTLLFVVRTVAHLWRQEGQGRNAQEIARRGGELYDKLVGFVDDMDALGNR
LAQAQKSFDAAYGKFARGRGNLVRQAEMLRELGVTPAKALSPALVERALEDDAADAAPVRPALRVAGDEAG
>Mature_471_residues
MIDIPLQMTLAALAGLGAGFVLAWLLQRGRGAQALERARLEAEAALAPLRERARLLEAEREALRVEQADVLARAEGWREA
LEKTRAERAVLAERLLAERRNAEEKIALLQQAREALSDQFKALAADILEEKSKRFTEQNQTNIGQLLEPLRERLQAFQGT
VEQVYVQEGKDRSALAEQVRQLMELNRALGEDAKNLTRALKGSVKAQGNWGELVLERVLEASGLRKGVEYDTQQSHARED
GSRAQPDVVIHLPEDRHLVVDAKVSLTAYEACVVAEDEAARQLAVRRHLESVRAHIKGLAERNYQQIHGVGSLDFVLMFV
PIEPAFMLAVTHDDALFMDAWQKNVLLVGPSTLLFVVRTVAHLWRQEGQGRNAQEIARRGGELYDKLVGFVDDMDALGNR
LAQAQKSFDAAYGKFARGRGNLVRQAEMLRELGVTPAKALSPALVERALEDDAADAAPVRPALRVAGDEAG

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=362, Percent_Identity=45.8563535911602, Blast_Score=339, Evalue=2e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 52147; Mature: 52147

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDIPLQMTLAALAGLGAGFVLAWLLQRGRGAQALERARLEAEAALAPLRERARLLEAER
CCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EALRVEQADVLARAEGWREALEKTRAERAVLAERLLAERRNAEEKIALLQQAREALSDQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
KALAADILEEKSKRFTEQNQTNIGQLLEPLRERLQAFQGTVEQVYVQEGKDRSALAEQVR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLMELNRALGEDAKNLTRALKGSVKAQGNWGELVLERVLEASGLRKGVEYDTQQSHARED
HHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
GSRAQPDVVIHLPEDRHLVVDAKVSLTAYEACVVAEDEAARQLAVRRHLESVRAHIKGLA
CCCCCCCEEEECCCCCEEEEECCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHH
ERNYQQIHGVGSLDFVLMFVPIEPAFMLAVTHDDALFMDAWQKNVLLVGPSTLLFVVRTV
HHHHHHHHCCCCHHHEEEEEECCCEEEEEEECCCHHHHHHHHCCEEEECCHHHHHHHHHH
AHLWRQEGQGRNAQEIARRGGELYDKLVGFVDDMDALGNRLAQAQKSFDAAYGKFARGRG
HHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLVRQAEMLRELGVTPAKALSPALVERALEDDAADAAPVRPALRVAGDEAG
HHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure
MIDIPLQMTLAALAGLGAGFVLAWLLQRGRGAQALERARLEAEAALAPLRERARLLEAER
CCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EALRVEQADVLARAEGWREALEKTRAERAVLAERLLAERRNAEEKIALLQQAREALSDQF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
KALAADILEEKSKRFTEQNQTNIGQLLEPLRERLQAFQGTVEQVYVQEGKDRSALAEQVR
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLMELNRALGEDAKNLTRALKGSVKAQGNWGELVLERVLEASGLRKGVEYDTQQSHARED
HHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCC
GSRAQPDVVIHLPEDRHLVVDAKVSLTAYEACVVAEDEAARQLAVRRHLESVRAHIKGLA
CCCCCCCEEEECCCCCEEEEECCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHH
ERNYQQIHGVGSLDFVLMFVPIEPAFMLAVTHDDALFMDAWQKNVLLVGPSTLLFVVRTV
HHHHHHHHCCCCHHHEEEEEECCCEEEEEEECCCHHHHHHHHCCEEEECCHHHHHHHHHH
AHLWRQEGQGRNAQEIARRGGELYDKLVGFVDDMDALGNRLAQAQKSFDAAYGKFARGRG
HHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NLVRQAEMLRELGVTPAKALSPALVERALEDDAADAAPVRPALRVAGDEAG
HHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]