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The map label for this gene is exbD6 [H]

Identifier: 119898623

GI number: 119898623

Start: 2563914

End: 2564342

Strand: Direct

Name: exbD6 [H]

Synonym: azo2332

Alternate gene names: 119898623

Gene position: 2563914-2564342 (Clockwise)

Preceding gene: 119898622

Following gene: 119898624

Centisome position: 58.59

GC content: 67.37

Gene sequence:

>429_bases
ATGGGAATGAACGTCGCCGCCGCCGGCGGCTCGGGCGATCCGGAAGTGCTGGTGGACATCAACACCACGCCGCTGATCGA
CGTGCTGCTGGTGCTGCTGATCATGCTGATCATCACCATCCCGATCCAGCTCCACTCGGTGAACATGAACATGCCGGTGG
GCACCCCGCCGCCGCCGACCACGCCGCCCGAGGTGGTGCGCATCGACATCGACCCTGCCGGCACGGTGCTGTGGAACGGC
GAGGCGCTGGCCGACGCAGACGCGCTGGAATCGCGCCTGACCACCGTCGCCGCGCTCGAATCGCCGCCCGAGCTGCACGT
CAATCCGGACAAGCGGGTGGCCTACAAGTCGGTCGCCACGGTCATGGCCGCGGTGCAGCGCAAGGGACTGACCAAGGTGG
GCCTGATCGGCGCCGAACAATTCCTCTGA

Upstream 100 bases:

>100_bases
CGTCGGCAAGGTGATCTTCGCCTGCCAGCGCGCCGGCATCGTCAAGGTCGGCTTCATCACCGAACCGCCGCCGCGCGGCT
GATCCACAGGAGAACCGACC

Downstream 100 bases:

>100_bases
GCACGCGGCCCGGCCGCCCCAGTCAACCGCCCCCGCGCTGTCGCGGGGGCGTTGGCATGCCCGTTACACCGCCCCCCGGG
GCGGCATTGCCTCCCAACTC

Product: putative biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MGMNVAAAGGSGDPEVLVDINTTPLIDVLLVLLIMLIITIPIQLHSVNMNMPVGTPPPPTTPPEVVRIDIDPAGTVLWNG
EALADADALESRLTTVAALESPPELHVNPDKRVAYKSVATVMAAVQRKGLTKVGLIGAEQFL

Sequences:

>Translated_142_residues
MGMNVAAAGGSGDPEVLVDINTTPLIDVLLVLLIMLIITIPIQLHSVNMNMPVGTPPPPTTPPEVVRIDIDPAGTVLWNG
EALADADALESRLTTVAALESPPELHVNPDKRVAYKSVATVMAAVQRKGLTKVGLIGAEQFL
>Mature_141_residues
GMNVAAAGGSGDPEVLVDINTTPLIDVLLVLLIMLIITIPIQLHSVNMNMPVGTPPPPTTPPEVVRIDIDPAGTVLWNGE
ALADADALESRLTTVAALESPPELHVNPDKRVAYKSVATVMAAVQRKGLTKVGLIGAEQFL

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=30.6451612903226, Blast_Score=64, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14892; Mature: 14760

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMNVAAAGGSGDPEVLVDINTTPLIDVLLVLLIMLIITIPIQLHSVNMNMPVGTPPPPT
CCCEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCC
TPPEVVRIDIDPAGTVLWNGEALADADALESRLTTVAALESPPELHVNPDKRVAYKSVAT
CCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHH
VMAAVQRKGLTKVGLIGAEQFL
HHHHHHHCCCCEEEECCHHHCC
>Mature Secondary Structure 
GMNVAAAGGSGDPEVLVDINTTPLIDVLLVLLIMLIITIPIQLHSVNMNMPVGTPPPPT
CCEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCC
TPPEVVRIDIDPAGTVLWNGEALADADALESRLTTVAALESPPELHVNPDKRVAYKSVAT
CCCCEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHH
VMAAVQRKGLTKVGLIGAEQFL
HHHHHHHCCCCEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]