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The map label for this gene is exbD5 [H]

Identifier: 119898622

GI number: 119898622

Start: 2563476

End: 2563895

Strand: Direct

Name: exbD5 [H]

Synonym: azo2331

Alternate gene names: 119898622

Gene position: 2563476-2563895 (Clockwise)

Preceding gene: 119898621

Following gene: 119898623

Centisome position: 58.58

GC content: 66.19

Gene sequence:

>420_bases
ATGGCGATGACCCTGCCGGGCGAAGAGGACGACGTCGTCTCCGCCATCAACACCACGCCGCTGGTGGACGTGATGCTGGT
GCTGCTGATCATCTTCCTGATCACCATCCCGGTCGTCACCAACACGGTGGCGGTGGAACTGCCCAAGGAAACCAACCAGC
CGCGCGTCACCGCGCCGGAGAACATCAACATCGCCGTCACCCGCGACGGCAAGGTGTTCTGGAACGAGAGCGCGGTGACC
GACAGCGAGGCGCTGGTCGAACGCCTGAAGGGCATCGCGCTGCAGGAACCGCAGCCCGAGGTACAGATCCGCGGCGACGG
CGAGGCGCCCTACGAGTTCGTCGGCAAGGTGATCTTCGCCTGCCAGCGCGCCGGCATCGTCAAGGTCGGCTTCATCACCG
AACCGCCGCCGCGCGGCTGA

Upstream 100 bases:

>100_bases
ACTCCACGCCGTGCTGCTCGGCGCCCACGCCGAAAAGGCCGCGCGCGGCAAGAGCGGCCACGCCCACCCGCCCATCCACG
CAGTCGCGGGGTAAGCCGCC

Downstream 100 bases:

>100_bases
TCCACAGGAGAACCGACCATGGGAATGAACGTCGCCGCCGCCGGCGGCTCGGGCGATCCGGAAGTGCTGGTGGACATCAA
CACCACGCCGCTGATCGACG

Product: putative biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MAMTLPGEEDDVVSAINTTPLVDVMLVLLIIFLITIPVVTNTVAVELPKETNQPRVTAPENINIAVTRDGKVFWNESAVT
DSEALVERLKGIALQEPQPEVQIRGDGEAPYEFVGKVIFACQRAGIVKVGFITEPPPRG

Sequences:

>Translated_139_residues
MAMTLPGEEDDVVSAINTTPLVDVMLVLLIIFLITIPVVTNTVAVELPKETNQPRVTAPENINIAVTRDGKVFWNESAVT
DSEALVERLKGIALQEPQPEVQIRGDGEAPYEFVGKVIFACQRAGIVKVGFITEPPPRG
>Mature_138_residues
AMTLPGEEDDVVSAINTTPLVDVMLVLLIIFLITIPVVTNTVAVELPKETNQPRVTAPENINIAVTRDGKVFWNESAVTD
SEALVERLKGIALQEPQPEVQIRGDGEAPYEFVGKVIFACQRAGIVKVGFITEPPPRG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15080; Mature: 14948

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMTLPGEEDDVVSAINTTPLVDVMLVLLIIFLITIPVVTNTVAVELPKETNQPRVTAPE
CCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEECCC
NINIAVTRDGKVFWNESAVTDSEALVERLKGIALQEPQPEVQIRGDGEAPYEFVGKVIFA
CCEEEEEECCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
CQRAGIVKVGFITEPPPRG
HHCCCEEEEEEECCCCCCC
>Mature Secondary Structure 
AMTLPGEEDDVVSAINTTPLVDVMLVLLIIFLITIPVVTNTVAVELPKETNQPRVTAPE
CCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEECCC
NINIAVTRDGKVFWNESAVTDSEALVERLKGIALQEPQPEVQIRGDGEAPYEFVGKVIFA
CCEEEEEECCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
CQRAGIVKVGFITEPPPRG
HHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]