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The map label for this gene is yciR [C]

Identifier: 119898617

GI number: 119898617

Start: 2557664

End: 2559307

Strand: Direct

Name: yciR [C]

Synonym: azo2326

Alternate gene names: 119898617

Gene position: 2557664-2559307 (Clockwise)

Preceding gene: 119898616

Following gene: 119898619

Centisome position: 58.45

GC content: 71.47

Gene sequence:

>1644_bases
ATGACGCTGAAACGAGTTTCCCAAAGCCTGCTCGCGCGCCTGATCGCCTTCGGCCTGCTGCTGGTGATTCTGGGCAGCTT
CGCGCGCTACTACCTGCTGGCGAAATACCTGCGGGAAGACCTCACCCAGCTCGTTTCCGCGCAGCAGCTCGCCTACGCTG
AAGCCGTCGCGCAGGACATCGACTTCAAGCTGCGCGAACGCCTGCGCCTGCTGCAGCGACTGGCCGCCACCCTGCCGCAG
ACGCTGCTCGACGACCCCGAACGCCTCGGCGCCTGGCTGGCCGAACGCCACAAGCTCAATCCGGTGTTTTCGCTCGGCAT
CGTGGTCGCGGATACGCGCGGCACCGTGCTGGCGGATTACCCCGCAGCGCCGGGCCGCAGCGGCGGTTCGCTGGCAGGCG
ACCCCGACTTCACCCACGCGCTGAAAGGCGAAGGCCGCATCGGCCGCCCCAAGACCGGGCTCTTCACCGGCGCCCGGCTG
CTGCCGATGAGCGTGCCGCTGCGCGCGCGCGACGGCAGCGTGCGCGCGGTGCTGATCGGCCTCACCGCGCTTGCCGCGCC
CGATTTCCTCGACCGTATCAGCCACGGCCGCATCGGCGAGAGCGGCGGCTTCCTGCTGGTTTCGCCCGCCGACCGGCTCT
TCGTGGCCGCGGGCAGGCCCGAGCTGGCGATGAAGCCGACGCCGCCGTCCGGCGTCAATCCGCTGCATGACAAGGCGATG
GACGGTTTTCGCGGCGCCGGCGTCACCACCAATGCGCAGGGCGTCGAGGAAGTCTCGGCGATCGCCAGCGTGCCGAGCAC
CGGCTGGTTCGTGGTCGCGCGGCTGCCCACCGCCGAAGCCTACGCGCCGGTGCGGCGCGCGCAGGAGGTGGTGATCCGCC
AGAGCATGATCGCGGTGGCGCTGGTGCTGGGCGTGGCCGGCTTCTTCATCCGCCGCATGCTCGGCCCGCTGCATCGCGCG
GCGCGGCTGGCCGAACGCATGACCGCGGGCGAGCTGCCGCTGGCCCCGCTGCCGGTGGTGCGCGACGACGAGGTCGGCCT
GCTGACGCGCGCCTTCAACCAGCTGCTCGGCAAGCTCACCGCCAGCCAGGTGGACCTGCAGCGGATGGCGCACCACGACG
AACTGACCGGCCTGCCCAACCGCGTGCTGCTGGCCGACCGCCTGCGCCAGGGGCTGGCGCGCGCCCGCCGCAAGGACAGC
CGCATCGCCGCGCTCTACCTCGACCTCGACGGCTTCAAACCGATCAACGACAGCCTGGGGCACGAGGCCGGCGACATCGC
GCTGAGGGACGTCAGCGCACGCCTGAGGGCGGTGCTGCGCCAGAGCGACACGCTGGCCCGTGTCGGCGGCGACGAGTTCG
TGCTGCTCGTCACCGACCTCGCCAGCCGCGAGGACTGCGCCGGCGTGACCGAACTCGCGCGCCGCTGCATCGAGGCGGTC
GCCCCGCCGCTGTCGATCAAGGGTCATACGCTGCGGGTGGGCGTGTCGATCGGTATCGCCTTCGGCGCCGCCCACGACGA
TCCGGAGTCCGTGCTGATGGCCGCCGACCACGCGATGTACGAGGCGAAGAAGGCCGGGCGCGGCTGCTACCGGATCGCCG
AAGCGGCATCTTCTCCGGCGGATACGGAGCCGCTCCCGGGCTAG

Upstream 100 bases:

>100_bases
CCGAAATCCCCACCTGAGGGCCGGCGCGCCGTGGTGCATTTCCGCCACGGTGCGCGCGTTTCGGGTAACCCGATGTTTCA
GCGTGGGATAAAATCTTTCT

Downstream 100 bases:

>100_bases
CGCACGCCGCATCTAGTGCGCGCAGTCGGCGCCGCGCGGCGCCAGGTCGCGCTGCAGCGCGGACAGGATGTCATCCAGGC
TGCGTTCCGCCGCCAGCATC

Product: putative signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 546

Protein sequence:

>547_residues
MTLKRVSQSLLARLIAFGLLLVILGSFARYYLLAKYLREDLTQLVSAQQLAYAEAVAQDIDFKLRERLRLLQRLAATLPQ
TLLDDPERLGAWLAERHKLNPVFSLGIVVADTRGTVLADYPAAPGRSGGSLAGDPDFTHALKGEGRIGRPKTGLFTGARL
LPMSVPLRARDGSVRAVLIGLTALAAPDFLDRISHGRIGESGGFLLVSPADRLFVAAGRPELAMKPTPPSGVNPLHDKAM
DGFRGAGVTTNAQGVEEVSAIASVPSTGWFVVARLPTAEAYAPVRRAQEVVIRQSMIAVALVLGVAGFFIRRMLGPLHRA
ARLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQLLGKLTASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDS
RIAALYLDLDGFKPINDSLGHEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARRCIEAV
APPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRIAEAASSPADTEPLPG

Sequences:

>Translated_547_residues
MTLKRVSQSLLARLIAFGLLLVILGSFARYYLLAKYLREDLTQLVSAQQLAYAEAVAQDIDFKLRERLRLLQRLAATLPQ
TLLDDPERLGAWLAERHKLNPVFSLGIVVADTRGTVLADYPAAPGRSGGSLAGDPDFTHALKGEGRIGRPKTGLFTGARL
LPMSVPLRARDGSVRAVLIGLTALAAPDFLDRISHGRIGESGGFLLVSPADRLFVAAGRPELAMKPTPPSGVNPLHDKAM
DGFRGAGVTTNAQGVEEVSAIASVPSTGWFVVARLPTAEAYAPVRRAQEVVIRQSMIAVALVLGVAGFFIRRMLGPLHRA
ARLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQLLGKLTASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDS
RIAALYLDLDGFKPINDSLGHEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARRCIEAV
APPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRIAEAASSPADTEPLPG
>Mature_546_residues
TLKRVSQSLLARLIAFGLLLVILGSFARYYLLAKYLREDLTQLVSAQQLAYAEAVAQDIDFKLRERLRLLQRLAATLPQT
LLDDPERLGAWLAERHKLNPVFSLGIVVADTRGTVLADYPAAPGRSGGSLAGDPDFTHALKGEGRIGRPKTGLFTGARLL
PMSVPLRARDGSVRAVLIGLTALAAPDFLDRISHGRIGESGGFLLVSPADRLFVAAGRPELAMKPTPPSGVNPLHDKAMD
GFRGAGVTTNAQGVEEVSAIASVPSTGWFVVARLPTAEAYAPVRRAQEVVIRQSMIAVALVLGVAGFFIRRMLGPLHRAA
RLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQLLGKLTASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDSR
IAALYLDLDGFKPINDSLGHEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARRCIEAVA
PPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRIAEAASSPADTEPLPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=170, Percent_Identity=36.4705882352941, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788381, Length=180, Percent_Identity=38.3333333333333, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=35.3658536585366, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=34.2541436464088, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=32.8042328042328, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=34.3023255813954, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=32.5301204819277, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=32.7683615819209, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=30.9210526315789, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=193, Percent_Identity=33.6787564766839, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787802, Length=279, Percent_Identity=28.673835125448, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081881, Length=163, Percent_Identity=34.3558282208589, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=30.625, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 58666; Mature: 58534

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKRVSQSLLARLIAFGLLLVILGSFARYYLLAKYLREDLTQLVSAQQLAYAEAVAQDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFKLRERLRLLQRLAATLPQTLLDDPERLGAWLAERHKLNPVFSLGIVVADTRGTVLADY
CHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEECC
PAAPGRSGGSLAGDPDFTHALKGEGRIGRPKTGLFTGARLLPMSVPLRARDGSVRAVLIG
CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEHHHH
LTALAAPDFLDRISHGRIGESGGFLLVSPADRLFVAAGRPELAMKPTPPSGVNPLHDKAM
HHHHHCHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH
DGFRGAGVTTNAQGVEEVSAIASVPSTGWFVVARLPTAEAYAPVRRAQEVVIRQSMIAVA
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LVLGVAGFFIRRMLGPLHRAARLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQLLGKLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDSRIAALYLDLDGFKPINDSLG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHC
HEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARRCIEAV
CCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
APPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRIAEAASSPA
CCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
DTEPLPG
CCCCCCC
>Mature Secondary Structure 
TLKRVSQSLLARLIAFGLLLVILGSFARYYLLAKYLREDLTQLVSAQQLAYAEAVAQDI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DFKLRERLRLLQRLAATLPQTLLDDPERLGAWLAERHKLNPVFSLGIVVADTRGTVLADY
CHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEECC
PAAPGRSGGSLAGDPDFTHALKGEGRIGRPKTGLFTGARLLPMSVPLRARDGSVRAVLIG
CCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEHHHH
LTALAAPDFLDRISHGRIGESGGFLLVSPADRLFVAAGRPELAMKPTPPSGVNPLHDKAM
HHHHHCHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHH
DGFRGAGVTTNAQGVEEVSAIASVPSTGWFVVARLPTAEAYAPVRRAQEVVIRQSMIAVA
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
LVLGVAGFFIRRMLGPLHRAARLAERMTAGELPLAPLPVVRDDEVGLLTRAFNQLLGKLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
ASQVDLQRMAHHDELTGLPNRVLLADRLRQGLARARRKDSRIAALYLDLDGFKPINDSLG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHC
HEAGDIALRDVSARLRAVLRQSDTLARVGGDEFVLLVTDLASREDCAGVTELARRCIEAV
CCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
APPLSIKGHTLRVGVSIGIAFGAAHDDPESVLMAADHAMYEAKKAGRGCYRIAEAASSPA
CCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC
DTEPLPG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]