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The map label for this gene is yddA [C]

Identifier: 119898603

GI number: 119898603

Start: 2541810

End: 2543588

Strand: Reverse

Name: yddA [C]

Synonym: azo2312

Alternate gene names: 119898603

Gene position: 2543588-2541810 (Counterclockwise)

Preceding gene: 119898604

Following gene: 119898601

Centisome position: 58.13

GC content: 68.47

Gene sequence:

>1779_bases
ATGGGCGCGGCCGCCTCTCCGCCTGTCTCGCGCGGCCGCGTATCGCAGTTGCTGCGCCAGTTCCGCCTGCTGGTGGCGCC
GTACTGGCGCAGCGAGCGCAAGTGGCGGATACGGGCGGCAACCGCCTGGCTGGTGCTGCTGACCATGGCCCAGGTGGGGT
TGGCGATCTGGATCAGCTACTGGAACCGCGAGCTGTTCGACGCGCTGGAGGAGCGCTCGCTGTCCGACCTCGCGCGCCAG
ACCCTCACCTTCGTGCTGATCTTCGTGCTGACGATGGCGGTGACCGCGGCGCATCTGCACATCAAGCGCTGGGTGCAGCT
GGACTGGCGCAAGTGGATGACCAGCCAGCTGCTCGACCGCTGGATGGCGCATGCACATCTGTATCGCCTGAACTACTCCA
GCGCCGACCACGACAACCCGGACGGGCGCATTGCCGAGGACGTGCGCATCGCCACCGACATGGCGATCACGCTGGCCCAT
TCACTGCTGTTCTCGCTGCTGATCCTGGGCAGCTTCGTCGACATTCTGCTCGAAGTTTCCGGTACCGCGCCGGTGCCCGG
CACCTCGTTCGCGGTGCCCGGCTTCATGGTGGCGATGGCCTTCGTCTATGCCGGCGTCGGCACCGTGCTGGGGCTGATGC
TGGGCCGCCCGCTGATCCGCAGCACCAACGTGCTGCAGGCGGTGGAGGCCAATTTCCGCTTCGGCCTGGCGCGGGCGCGC
GAGCATTCCGAGCCGGTGGCGATGATGCGGGGCGAGCGTTTCGAGCGCCGCGCGGCCGACCAGCAGTTTGCCGACGTGGG
CCGCGGCTGGAACCTGCAGACGCTCGCCTATCTCGGCATCGTGTCGTTTTCCACCGGCTACGGCACGCTGCTGCCGGTGT
TCCCCATCCTGATCGCGGCGCCGCAGTACATCGGCGGGGCGATGTCGCTGGGCTTGCTGATGCAGGCAGCACAGGCCTTC
CAGCGCCTGACCTCGGCGCTGTCGTGGCCGGTGGACAACCTCGGCGACCTCGCGCGCTGTCGGGCATCCATCGACCGCAT
CGTGGCGCTGTATGAAGACCTGGATGCGCTGGAGCGGCGCGGCTGGGAGAACGACGCCAGCGGCGAGCGCATCCGCGTCA
TCCATTCCCACCACCCGGAGCTGCGCATCAGCGGACTGCGCCTCGAATCGCCCAGCGGGCAGGTGCTGCTGGAGGATTTC
GAGCTGCATGTGCGGCGCGGCGAACGCATCCTGATCACCGGCGACCCGGCGCTGACGATCAGCCTGTTCAAGGCGGTGGC
GGGCCTGTGGCCATGGGGCAGGGGCGAGATCAGCCTGCCCGAAGGGCGCGACATGATGTTCCTGCCGCAGCGCCCCTTCC
TGCCCGAAGGCACGCTGCGCGCGGTGCTGAGTTACCCGCAGCGTGCCACCCGTTACAGCGACGCCGCGCTGCATCGCGCG
CTGGAATGCGCCGGCATCTCCTGGCTAGCACCGCGGCTGGACGAAAGCGAGGACTGGAGCCGCAGCCTCTCGCTGCGCGC
GCAGCAGCGGCTGGGCATTGCGCGCCTCTTCCTGCAGCAGCCGGGCTGGGTGTTCATCGAGGAAGCCACCGACGCCTTCG
ACCTGAAGGACGAGGTGTGCACCATGGAGATGCTGCACCACGAGCTGCCCAGCACCACGCTGCTCAACATCAGCCTGCAC
AACGGCCTGTTCCACTTCTACGACCGCAAGCTGGTACTGACGCGCCAGCGCGAGCCCGCCGCGCGGGCCCGCGAAGCCGC
CGCGCTACCGGAAGCTTGA

Upstream 100 bases:

>100_bases
TGATGGAGCGGATTCCGCTTCATGTCGTCACCGACGAACTGCTCGGGCTGAAGGGCGCGGCCCAACTGGCGGCGCGCCTG
GCGCGCGGGCTGGACTGACG

Downstream 100 bases:

>100_bases
CGGCAGCCAGCCGCGCTCCACGCTGTCGCGGAAGCACCAGGCCGGCGTGGTCTCGGTCTTGTAGCTCCAGAAGAACCAGC
CGAGGTATTTCTCGAAGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 592; Mature: 591

Protein sequence:

>592_residues
MGAAASPPVSRGRVSQLLRQFRLLVAPYWRSERKWRIRAATAWLVLLTMAQVGLAIWISYWNRELFDALEERSLSDLARQ
TLTFVLIFVLTMAVTAAHLHIKRWVQLDWRKWMTSQLLDRWMAHAHLYRLNYSSADHDNPDGRIAEDVRIATDMAITLAH
SLLFSLLILGSFVDILLEVSGTAPVPGTSFAVPGFMVAMAFVYAGVGTVLGLMLGRPLIRSTNVLQAVEANFRFGLARAR
EHSEPVAMMRGERFERRAADQQFADVGRGWNLQTLAYLGIVSFSTGYGTLLPVFPILIAAPQYIGGAMSLGLLMQAAQAF
QRLTSALSWPVDNLGDLARCRASIDRIVALYEDLDALERRGWENDASGERIRVIHSHHPELRISGLRLESPSGQVLLEDF
ELHVRRGERILITGDPALTISLFKAVAGLWPWGRGEISLPEGRDMMFLPQRPFLPEGTLRAVLSYPQRATRYSDAALHRA
LECAGISWLAPRLDESEDWSRSLSLRAQQRLGIARLFLQQPGWVFIEEATDAFDLKDEVCTMEMLHHELPSTTLLNISLH
NGLFHFYDRKLVLTRQREPAARAREAAALPEA

Sequences:

>Translated_592_residues
MGAAASPPVSRGRVSQLLRQFRLLVAPYWRSERKWRIRAATAWLVLLTMAQVGLAIWISYWNRELFDALEERSLSDLARQ
TLTFVLIFVLTMAVTAAHLHIKRWVQLDWRKWMTSQLLDRWMAHAHLYRLNYSSADHDNPDGRIAEDVRIATDMAITLAH
SLLFSLLILGSFVDILLEVSGTAPVPGTSFAVPGFMVAMAFVYAGVGTVLGLMLGRPLIRSTNVLQAVEANFRFGLARAR
EHSEPVAMMRGERFERRAADQQFADVGRGWNLQTLAYLGIVSFSTGYGTLLPVFPILIAAPQYIGGAMSLGLLMQAAQAF
QRLTSALSWPVDNLGDLARCRASIDRIVALYEDLDALERRGWENDASGERIRVIHSHHPELRISGLRLESPSGQVLLEDF
ELHVRRGERILITGDPALTISLFKAVAGLWPWGRGEISLPEGRDMMFLPQRPFLPEGTLRAVLSYPQRATRYSDAALHRA
LECAGISWLAPRLDESEDWSRSLSLRAQQRLGIARLFLQQPGWVFIEEATDAFDLKDEVCTMEMLHHELPSTTLLNISLH
NGLFHFYDRKLVLTRQREPAARAREAAALPEA
>Mature_591_residues
GAAASPPVSRGRVSQLLRQFRLLVAPYWRSERKWRIRAATAWLVLLTMAQVGLAIWISYWNRELFDALEERSLSDLARQT
LTFVLIFVLTMAVTAAHLHIKRWVQLDWRKWMTSQLLDRWMAHAHLYRLNYSSADHDNPDGRIAEDVRIATDMAITLAHS
LLFSLLILGSFVDILLEVSGTAPVPGTSFAVPGFMVAMAFVYAGVGTVLGLMLGRPLIRSTNVLQAVEANFRFGLARARE
HSEPVAMMRGERFERRAADQQFADVGRGWNLQTLAYLGIVSFSTGYGTLLPVFPILIAAPQYIGGAMSLGLLMQAAQAFQ
RLTSALSWPVDNLGDLARCRASIDRIVALYEDLDALERRGWENDASGERIRVIHSHHPELRISGLRLESPSGQVLLEDFE
LHVRRGERILITGDPALTISLFKAVAGLWPWGRGEISLPEGRDMMFLPQRPFLPEGTLRAVLSYPQRATRYSDAALHRAL
ECAGISWLAPRLDESEDWSRSLSLRAQQRLGIARLFLQQPGWVFIEEATDAFDLKDEVCTMEMLHHELPSTTLLNISLHN
GLFHFYDRKLVLTRQREPAARAREAAALPEA

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=578, Percent_Identity=26.2975778546713, Blast_Score=130, Evalue=5e-30,
Organism=Homo sapiens, GI4506341, Length=541, Percent_Identity=23.4750462107209, Blast_Score=118, Evalue=2e-26,
Organism=Homo sapiens, GI9945308, Length=588, Percent_Identity=22.2789115646259, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI7262393, Length=560, Percent_Identity=23.5714285714286, Blast_Score=93, Evalue=7e-19,
Organism=Escherichia coli, GI1787772, Length=559, Percent_Identity=26.1180679785331, Blast_Score=222, Evalue=6e-59,
Organism=Caenorhabditis elegans, GI17532411, Length=606, Percent_Identity=22.2772277227723, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17542146, Length=579, Percent_Identity=21.9343696027634, Blast_Score=105, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17532409, Length=505, Percent_Identity=23.5643564356436, Blast_Score=105, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17558960, Length=526, Percent_Identity=22.4334600760456, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI72000520, Length=468, Percent_Identity=23.2905982905983, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17564250, Length=468, Percent_Identity=23.2905982905983, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24643394, Length=506, Percent_Identity=24.901185770751, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24638550, Length=486, Percent_Identity=23.0452674897119, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24638552, Length=486, Percent_Identity=23.0452674897119, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24638554, Length=486, Percent_Identity=23.0452674897119, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24638546, Length=486, Percent_Identity=23.0452674897119, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24638556, Length=486, Percent_Identity=23.0452674897119, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24638548, Length=486, Percent_Identity=23.0452674897119, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24638558, Length=486, Percent_Identity=23.0452674897119, Blast_Score=93, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 66606; Mature: 66475

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAAASPPVSRGRVSQLLRQFRLLVAPYWRSERKWRIRAATAWLVLLTMAQVGLAIWISY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
WNRELFDALEERSLSDLARQTLTFVLIFVLTMAVTAAHLHIKRWVQLDWRKWMTSQLLDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WMAHAHLYRLNYSSADHDNPDGRIAEDVRIATDMAITLAHSLLFSLLILGSFVDILLEVS
HHHHHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTAPVPGTSFAVPGFMVAMAFVYAGVGTVLGLMLGRPLIRSTNVLQAVEANFRFGLARAR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
EHSEPVAMMRGERFERRAADQQFADVGRGWNLQTLAYLGIVSFSTGYGTLLPVFPILIAA
HCCCCHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
PQYIGGAMSLGLLMQAAQAFQRLTSALSWPVDNLGDLARCRASIDRIVALYEDLDALERR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GWENDASGERIRVIHSHHPELRISGLRLESPSGQVLLEDFELHVRRGERILITGDPALTI
CCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEHHHHHHHHCCCCEEEEECCCHHHH
SLFKAVAGLWPWGRGEISLPEGRDMMFLPQRPFLPEGTLRAVLSYPQRATRYSDAALHRA
HHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHH
LECAGISWLAPRLDESEDWSRSLSLRAQQRLGIARLFLQQPGWVFIEEATDAFDLKDEVC
HHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
TMEMLHHELPSTTLLNISLHNGLFHFYDRKLVLTRQREPAARAREAAALPEA
HHHHHHHHCCCCEEEEEEHHCCHHHHHCCEEEEEECCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
GAAASPPVSRGRVSQLLRQFRLLVAPYWRSERKWRIRAATAWLVLLTMAQVGLAIWISY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHCCCCEEEEEEHHCCHHHHHCCEEEEEECCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]