Click here to switch to the map view.

The map label for this gene is dctM3 [C]

Identifier: 119898576

GI number: 119898576

Start: 2504880

End: 2506196

Strand: Reverse

Name: dctM3 [C]

Synonym: azo2285

Alternate gene names: 119898576

Gene position: 2506196-2504880 (Counterclockwise)

Preceding gene: 119898577

Following gene: 119898575

Centisome position: 57.27

GC content: 66.67

Gene sequence:

>1317_bases
ATGGAATGGCAATCCGCGCTGGTATTGATGCTGGGCTGTCTGTTCGCGCTGATGCTGCTGGGGCTGCCGGTCGCCTTCGC
CTTTCTCGGGGTGAATCTGCTGGGCGCCTGGATCTTCCTCGGCGGTGAAGCGGGGCTGGGGCAGCTCGTGCGCAACTCGG
TGGGTGCGGTCAGCAGCTTTTCGCTCACACCGATTCCCCTGTTCGTGCTAATGGGCGAGGTGCTGTTCCACACCGGGCTT
GCGTTCAAGGCGATCGAGGCGATCGAACGCCTGATCGCGCGCGTCCCGGGGCGGCTGTCCGTGGTGTCGGTGCTCGGCGG
CACGGTGTTCGCCACGCTGTCGGGTTCCACCATCGCCAACACCGCGATGATGGGCGGCACGCTGCTGCCGGAGATGCTGC
GCCGCGGCTACCACCCCACCTTGTCGATGGGGCCGATCATGGCGGTGGGCGGCATCGCGATGCTGATCCCGCCCTCGGCG
CTGGCGGTGATGCTGGGCAGCCTGGGTGGCATCTCGATCTCGCAGTTGCTGATCGGCGGCATCCTGCCGGGATTGGTGAT
GTCCGTCGGCTTCCTCGGCTACATCGTGCTGCGCTGCAAGGCCGATCCCTCCCTGGCACCGGCGGACGACAACGTGGTCG
AGGTCCATGGCTGGGCGCGCTGGCAGCCCTTCGTGCGTGACGTGGTGCCGCTGTTCGCAATCTTCGTCGCGGTGGTCGGC
AGCATGCTGGTCGGCTGGGCCTCGCCGACCGAATCGGCCGCGATCGGCGCGCTGGCCTCGGTGCTGGCGACCATGGCCTA
CCGCGCGCTGACGCTGCAAGCGCTCTACAAGGCGCTGATGGAGACCGCGCGGGTGTCGGTGATCATCCTGTTCGTGATGG
TCGCCTCCACCACCTTCTCGCAGCTGCTGAGTTTTTCCGGCGCCACCAGCGGCTTGCTCGGCCTGATCAACGGCCTCGAG
CTGTCGCCCCTGATGCTGGTGATCGGCATGCTGTTCCTGCTGCTGTTGCTCGGCTGCGTCATCGACCAGGTCAGCATGAT
GATGATCACGCTGCCCTTCTTCATGCCGCTGGCGCACGCGGCCGGCATCGACACGGTGTGGCTGGGCGTGATGATGCTGA
TCGCGATCGAGCTGGGCCTGCTGACGCCGCCTTTCGGTCTGTTGCTGATGGTGATGCAGAGCGTCGCCCCGCCGCATATC
CGCCTGCCGCAGATTTACCGCTCCGCGGTGCCCTTTGTCGCCATCGAACTCGTCGTGCTCGGCCTCATCGTGGCCGTGCC
CGCGCTGGCGCTGGGCTTGCCCCGGCTGATGAGCTGA

Upstream 100 bases:

>100_bases
GAATGGTGGCTCAAGCTGCCGATGGCTTTCGCCTGCGCGATGCTGGCGGTGGAGTTCGCCCGCCGCCTGCGCGCGGCCTT
CGTGCGCGGAGGACGCTGAG

Downstream 100 bases:

>100_bases
GCGTCCTTTACCGAATCGTCTTCCCACGGAGAGCACCATGCACAAGACCACCCGTACCCTTGCCGCCACCTTCGTACTCG
CGCTCTCGGCCGGCGCCGCC

Product: putative TRAP-type C4-dicarboxylate transport system large permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MEWQSALVLMLGCLFALMLLGLPVAFAFLGVNLLGAWIFLGGEAGLGQLVRNSVGAVSSFSLTPIPLFVLMGEVLFHTGL
AFKAIEAIERLIARVPGRLSVVSVLGGTVFATLSGSTIANTAMMGGTLLPEMLRRGYHPTLSMGPIMAVGGIAMLIPPSA
LAVMLGSLGGISISQLLIGGILPGLVMSVGFLGYIVLRCKADPSLAPADDNVVEVHGWARWQPFVRDVVPLFAIFVAVVG
SMLVGWASPTESAAIGALASVLATMAYRALTLQALYKALMETARVSVIILFVMVASTTFSQLLSFSGATSGLLGLINGLE
LSPLMLVIGMLFLLLLLGCVIDQVSMMMITLPFFMPLAHAAGIDTVWLGVMMLIAIELGLLTPPFGLLLMVMQSVAPPHI
RLPQIYRSAVPFVAIELVVLGLIVAVPALALGLPRLMS

Sequences:

>Translated_438_residues
MEWQSALVLMLGCLFALMLLGLPVAFAFLGVNLLGAWIFLGGEAGLGQLVRNSVGAVSSFSLTPIPLFVLMGEVLFHTGL
AFKAIEAIERLIARVPGRLSVVSVLGGTVFATLSGSTIANTAMMGGTLLPEMLRRGYHPTLSMGPIMAVGGIAMLIPPSA
LAVMLGSLGGISISQLLIGGILPGLVMSVGFLGYIVLRCKADPSLAPADDNVVEVHGWARWQPFVRDVVPLFAIFVAVVG
SMLVGWASPTESAAIGALASVLATMAYRALTLQALYKALMETARVSVIILFVMVASTTFSQLLSFSGATSGLLGLINGLE
LSPLMLVIGMLFLLLLLGCVIDQVSMMMITLPFFMPLAHAAGIDTVWLGVMMLIAIELGLLTPPFGLLLMVMQSVAPPHI
RLPQIYRSAVPFVAIELVVLGLIVAVPALALGLPRLMS
>Mature_438_residues
MEWQSALVLMLGCLFALMLLGLPVAFAFLGVNLLGAWIFLGGEAGLGQLVRNSVGAVSSFSLTPIPLFVLMGEVLFHTGL
AFKAIEAIERLIARVPGRLSVVSVLGGTVFATLSGSTIANTAMMGGTLLPEMLRRGYHPTLSMGPIMAVGGIAMLIPPSA
LAVMLGSLGGISISQLLIGGILPGLVMSVGFLGYIVLRCKADPSLAPADDNVVEVHGWARWQPFVRDVVPLFAIFVAVVG
SMLVGWASPTESAAIGALASVLATMAYRALTLQALYKALMETARVSVIILFVMVASTTFSQLLSFSGATSGLLGLINGLE
LSPLMLVIGMLFLLLLLGCVIDQVSMMMITLPFFMPLAHAAGIDTVWLGVMMLIAIELGLLTPPFGLLLMVMQSVAPPHI
RLPQIYRSAVPFVAIELVVLGLIVAVPALALGLPRLMS

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=426, Percent_Identity=31.2206572769953, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45962; Mature: 45962

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHCHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]