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The map label for this gene is ybdK [C]

Identifier: 119898567

GI number: 119898567

Start: 2493825

End: 2494952

Strand: Reverse

Name: ybdK [C]

Synonym: azo2276

Alternate gene names: 119898567

Gene position: 2494952-2493825 (Counterclockwise)

Preceding gene: 119898568

Following gene: 119898566

Centisome position: 57.01

GC content: 66.05

Gene sequence:

>1128_bases
ATGAGCCTCGAAGCCTTTTCGCCGTCGCGCGCACTGTCGATCGGTGTGGAACTCGAACTGCAACTGGTCGGCACCCACGA
CTATGACCTGGTCGGCGCCGCCGACGACATGCTGCGGCTGACCGCGGGGCTGGACCTGCCCGGCGACATCAAGCCCGAGA
TGACCGATTCGATGATCGAAATCTCGACCGGCGTGTGCGACAACCACGCGATGGTGTTGACGCAGCTGGACGGGCTGCGT
GCCGCGCTGGTGGATATCGCCCGCCGGCTCAACGTCGGCATCTGCGGCGGTGGCACCCACGGCTTTCAGGATTGGGGCGA
ACGCCGCATCTTCGATAACCCGCGTTTTCATTACCTGCACGAACTCTACGGCTACCTCGCCAAGCAGTTCACCGTGTTCG
GCCAGCATGTGCACATCGGCTGCCCGGGGCCGGACGCGGCGCTCTATCTGGTGCACGGCCTGTCGCGCTACATCCCGCAC
CTGATCGCGCTGTCGGCCTCGTCGCCTTTCCTGCAGGGGCAGGACACCGGCTTCCAGTCCTCGCGCCTCAATGCGGTATT
CGCCTTCCCGCTGTCGGGCCGCGCGCCCTTCGCGCTCAGCTGGAGCGACTTCGGCGCCTACTTCGACAAGATGAGCGCCA
CCGGCGTCGTCAGCAGCATGAAGGACTTCTACTGGGACATCCGCCCCAAGCCGGAGTACGGCACGGTGGAAGTGCGGGTG
ATGGACACCCCGCTGACGGTCGAACGCGCGGCCGCGCTGGCAGCCTACATCCAGGCCTTGGCGCGCTACCTGATGGTGGA
GCGGCCGATCCAGCCGCGCGAGGATGATTACCTCGTCTATACCTTCAACCGCTTCCAGGCCTGCCGCTTCGGCTATGCCG
GCACCTATGTCGATCCGGAGAACCACACCCACTGCTCGATTGCCGAAGCGCTGGAAGCGAGCTTCACGCGCATCGAGCAG
CATGCGATCGAACTCGGGGCGGAAGCGGCAATCGGGCGCCTGCGCGCGGATGTCGCGAGCGGGCGCAATGACGCCTGGTG
GTTGCGCGGGCAGCTGGGCCCGCAGGTAACGCTGCCGGAGGTGGTGATGGCGCAGTGCCGGCGCTGGATGAACGGGGAGG
GCATGTGA

Upstream 100 bases:

>100_bases
CCATCGTGCTGTGCATGGTGGCGCTGCTCGGCGTGTTCGGGCCGATCGCCACCCAGCGCGCGCTGATCCATGCGCGCGAG
AACCGTAGCGGAGCCGAGCA

Downstream 100 bases:

>100_bases
GTGGGGGACCACTGCGGATAGGACTCTCGGCCCGGCTGCTGCACAAGCCGCCGCCCGAACTCGGCTTTCCCGGCAAGAGC
CTGCAGTATCTCGAGCAGTC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MSLEAFSPSRALSIGVELELQLVGTHDYDLVGAADDMLRLTAGLDLPGDIKPEMTDSMIEISTGVCDNHAMVLTQLDGLR
AALVDIARRLNVGICGGGTHGFQDWGERRIFDNPRFHYLHELYGYLAKQFTVFGQHVHIGCPGPDAALYLVHGLSRYIPH
LIALSASSPFLQGQDTGFQSSRLNAVFAFPLSGRAPFALSWSDFGAYFDKMSATGVVSSMKDFYWDIRPKPEYGTVEVRV
MDTPLTVERAAALAAYIQALARYLMVERPIQPREDDYLVYTFNRFQACRFGYAGTYVDPENHTHCSIAEALEASFTRIEQ
HAIELGAEAAIGRLRADVASGRNDAWWLRGQLGPQVTLPEVVMAQCRRWMNGEGM

Sequences:

>Translated_375_residues
MSLEAFSPSRALSIGVELELQLVGTHDYDLVGAADDMLRLTAGLDLPGDIKPEMTDSMIEISTGVCDNHAMVLTQLDGLR
AALVDIARRLNVGICGGGTHGFQDWGERRIFDNPRFHYLHELYGYLAKQFTVFGQHVHIGCPGPDAALYLVHGLSRYIPH
LIALSASSPFLQGQDTGFQSSRLNAVFAFPLSGRAPFALSWSDFGAYFDKMSATGVVSSMKDFYWDIRPKPEYGTVEVRV
MDTPLTVERAAALAAYIQALARYLMVERPIQPREDDYLVYTFNRFQACRFGYAGTYVDPENHTHCSIAEALEASFTRIEQ
HAIELGAEAAIGRLRADVASGRNDAWWLRGQLGPQVTLPEVVMAQCRRWMNGEGM
>Mature_374_residues
SLEAFSPSRALSIGVELELQLVGTHDYDLVGAADDMLRLTAGLDLPGDIKPEMTDSMIEISTGVCDNHAMVLTQLDGLRA
ALVDIARRLNVGICGGGTHGFQDWGERRIFDNPRFHYLHELYGYLAKQFTVFGQHVHIGCPGPDAALYLVHGLSRYIPHL
IALSASSPFLQGQDTGFQSSRLNAVFAFPLSGRAPFALSWSDFGAYFDKMSATGVVSSMKDFYWDIRPKPEYGTVEVRVM
DTPLTVERAAALAAYIQALARYLMVERPIQPREDDYLVYTFNRFQACRFGYAGTYVDPENHTHCSIAEALEASFTRIEQH
AIELGAEAAIGRLRADVASGRNDAWWLRGQLGPQVTLPEVVMAQCRRWMNGEGM

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=42.5474254742547, Blast_Score=314, Evalue=5e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_AZOSB (A1K7T8)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_933780.1
- ProteinModelPortal:   A1K7T8
- SMR:   A1K7T8
- STRING:   A1K7T8
- GeneID:   4607325
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo2276
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- PhylomeDB:   A1K7T8
- ProtClustDB:   PRK13516
- BioCyc:   ASP62928:AZO2276-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 41577; Mature: 41446

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEAFSPSRALSIGVELELQLVGTHDYDLVGAADDMLRLTAGLDLPGDIKPEMTDSMIE
CCCCCCCCCCEEEEEEEEEEEEECCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHHHH
ISTGVCDNHAMVLTQLDGLRAALVDIARRLNVGICGGGTHGFQDWGERRIFDNPRFHYLH
HHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCCCHHHHHH
ELYGYLAKQFTVFGQHVHIGCPGPDAALYLVHGLSRYIPHLIALSASSPFLQGQDTGFQS
HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
SRLNAVFAFPLSGRAPFALSWSDFGAYFDKMSATGVVSSMKDFYWDIRPKPEYGTVEVRV
CCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERAAALAAYIQALARYLMVERPIQPREDDYLVYTFNRFQACRFGYAGTYVDPE
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCCCCEECCC
NHTHCSIAEALEASFTRIEQHAIELGAEAAIGRLRADVASGRNDAWWLRGQLGPQVTLPE
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
VVMAQCRRWMNGEGM
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
SLEAFSPSRALSIGVELELQLVGTHDYDLVGAADDMLRLTAGLDLPGDIKPEMTDSMIE
CCCCCCCCCEEEEEEEEEEEEECCCCCCEECCHHHHHHHHHCCCCCCCCCCCHHHHHHH
ISTGVCDNHAMVLTQLDGLRAALVDIARRLNVGICGGGTHGFQDWGERRIFDNPRFHYLH
HHCCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCCCHHHHHH
ELYGYLAKQFTVFGQHVHIGCPGPDAALYLVHGLSRYIPHLIALSASSPFLQGQDTGFQS
HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
SRLNAVFAFPLSGRAPFALSWSDFGAYFDKMSATGVVSSMKDFYWDIRPKPEYGTVEVRV
CCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
MDTPLTVERAAALAAYIQALARYLMVERPIQPREDDYLVYTFNRFQACRFGYAGTYVDPE
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCCCCEECCC
NHTHCSIAEALEASFTRIEQHAIELGAEAAIGRLRADVASGRNDAWWLRGQLGPQVTLPE
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
VVMAQCRRWMNGEGM
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA