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The map label for this gene is yciO [H]

Identifier: 119898405

GI number: 119898405

Start: 2321072

End: 2321704

Strand: Reverse

Name: yciO [H]

Synonym: azo2114

Alternate gene names: 119898405

Gene position: 2321704-2321072 (Counterclockwise)

Preceding gene: 119898406

Following gene: 119898404

Centisome position: 53.05

GC content: 66.98

Gene sequence:

>633_bases
ATGGCCCAGTTCTTTTCCCTGCACCCCGACCAACCACAACCGCGCCTCATCCGTCAGGCCGCGGAGATCATCCGCGGTGG
CGGCCTTGTCGCCTTTCCCACCGACTCTGCCTACGCACTGGGCGGCCACACCGGCGATGCGCCGCTGCTGGAGCGGATAC
GCCGCATCCGCGGGGTGGACGAGCGTCACCAATTCACGCTGCTGTGCCGCGACCTGTCGGAGATTGCAACCTACGCGCGG
GTCGACAACAGCCAGTACCGTTTGCTGAAGGCGGTGACGCCCGGTGCGTACACTTTCATTCTCGAAGGCACCCGCGAGTT
GCCGCGGCGTGTGCTGCATCCGAAACGCAAGACGATCGGCCTGCGGATTCCCGAACACGCGGTGGTTTCCGCGCTGCTGG
CCGAGCTCGGCGAGCCGCTCCTGTCTTCGACGCTGCTGCTGCCCGACGAAGATCTGCCCCTGACCGACCCGGAGGAGATT
CGCGACCGGCTGGAAAAGCAGGTCGATCTGGTGATCGAAGCCGGCTTCTGCGGTCCGGAGGCGACCACCGTGGTCGATCT
CACCTCCGGCGTGCCGGTACTGGTGCGCGCTGGCCGCGGCGAGCTTGCACCGCTTGGCCTGGAGGCGCCCTGA

Upstream 100 bases:

>100_bases
CATGGTGACACCGAAAGCCCGGTGGACGTCGGCCGCTGCCCACCACTGCCGCCCGACCTCGTACCGGTCTGGTCCCGGCT
GATTCCATCCTGACCCCATC

Downstream 100 bases:

>100_bases
TTGGACGCCCTCTGCTAGAATCGCGCGCTTTCCTACGCGCCCACCCATGGATTCGCTGATCCCCACGCTTGCCATCTGGG
CGTTGCCCGTGCTGCTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MAQFFSLHPDQPQPRLIRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVDERHQFTLLCRDLSEIATYAR
VDNSQYRLLKAVTPGAYTFILEGTRELPRRVLHPKRKTIGLRIPEHAVVSALLAELGEPLLSSTLLLPDEDLPLTDPEEI
RDRLEKQVDLVIEAGFCGPEATTVVDLTSGVPVLVRAGRGELAPLGLEAP

Sequences:

>Translated_210_residues
MAQFFSLHPDQPQPRLIRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVDERHQFTLLCRDLSEIATYAR
VDNSQYRLLKAVTPGAYTFILEGTRELPRRVLHPKRKTIGLRIPEHAVVSALLAELGEPLLSSTLLLPDEDLPLTDPEEI
RDRLEKQVDLVIEAGFCGPEATTVVDLTSGVPVLVRAGRGELAPLGLEAP
>Mature_209_residues
AQFFSLHPDQPQPRLIRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVDERHQFTLLCRDLSEIATYARV
DNSQYRLLKAVTPGAYTFILEGTRELPRRVLHPKRKTIGLRIPEHAVVSALLAELGEPLLSSTLLLPDEDLPLTDPEEIR
DRLEKQVDLVIEAGFCGPEATTVVDLTSGVPVLVRAGRGELAPLGLEAP

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=179, Percent_Identity=31.8435754189944, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=57.0731707317073, Blast_Score=254, Evalue=3e-69,
Organism=Drosophila melanogaster, GI78707274, Length=185, Percent_Identity=28.6486486486486, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23037; Mature: 22906

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQFFSLHPDQPQPRLIRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVD
CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCHHHHHHHHHHCCCC
ERHQFTLLCRDLSEIATYARVDNSQYRLLKAVTPGAYTFILEGTRELPRRVLHPKRKTIG
CHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCEEEEEECCCHHHHHHHHCCCCCEEC
LRIPEHAVVSALLAELGEPLLSSTLLLPDEDLPLTDPEEIRDRLEKQVDLVIEAGFCGPE
CCCCHHHHHHHHHHHHCHHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
ATTVVDLTSGVPVLVRAGRGELAPLGLEAP
CCEEEEECCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
AQFFSLHPDQPQPRLIRQAAEIIRGGGLVAFPTDSAYALGGHTGDAPLLERIRRIRGVD
CCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCHHHHHHHHHHCCCC
ERHQFTLLCRDLSEIATYARVDNSQYRLLKAVTPGAYTFILEGTRELPRRVLHPKRKTIG
CHHHHHHHHHHHHHHHHHHHCCCCHHEEEEEECCCEEEEEECCCHHHHHHHHCCCCCEEC
LRIPEHAVVSALLAELGEPLLSSTLLLPDEDLPLTDPEEIRDRLEKQVDLVIEAGFCGPE
CCCCHHHHHHHHHHHHCHHHHHCEECCCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCC
ATTVVDLTSGVPVLVRAGRGELAPLGLEAP
CCEEEEECCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]