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The map label for this gene is rbfA

Identifier: 119898397

GI number: 119898397

Start: 2312537

End: 2312917

Strand: Reverse

Name: rbfA

Synonym: azo2106

Alternate gene names: 119898397

Gene position: 2312917-2312537 (Counterclockwise)

Preceding gene: 119898398

Following gene: 119898396

Centisome position: 52.85

GC content: 64.83

Gene sequence:

>381_bases
ATGCCTAAGGAATATTCCCGAAGCCAGCGCGTGGTGGAGCAGATCCGCCGCGAACTGGCGGAGCTGATCCGGCTAGAGGT
GAAGGACCCGCGCGTCGGGTTCATCACCTTGACGGATGTCGAGATCTCGCCGGACTACGCGCACGCGAAGGTGTTTTTCA
CGTCGATGACGGGCGAGGAAAGCGTGCCCGAGATCCTCCAGGGCTTGCGGCGCGCCAGCGGGTTCCTGCGGCGCGAACTC
GGCCGCCGCGTTCGTATCCACACCACCCCCGAGCTGCACTTCCACTACGACCGCTCGGTCGAGGAGGGTAGCCGGTTGTC
CCGCCTGATCGACGACGCCGTGCGCGAAGACGAAATCCGTCACCGCGACGACGACAACTAG

Upstream 100 bases:

>100_bases
CTATGAGTGCGGTTTGCAGCTCAAGAACTACAACGACATCCAGGTGGGCGATCAGCTCGAGGTCTTCGAAATCAAGGAAG
TTGCACGGACCCTGTAATCG

Downstream 100 bases:

>100_bases
CTTTCCGAGGCTTCCCATGCAGCGCAAGATTCCGCGACGCATCGTGGACGGCGTCCTATTGCTGGACAAGCCGAGCGGCA
TGACCAGCAATGGCGCGCTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MPKEYSRSQRVVEQIRRELAELIRLEVKDPRVGFITLTDVEISPDYAHAKVFFTSMTGEESVPEILQGLRRASGFLRREL
GRRVRIHTTPELHFHYDRSVEEGSRLSRLIDDAVREDEIRHRDDDN

Sequences:

>Translated_126_residues
MPKEYSRSQRVVEQIRRELAELIRLEVKDPRVGFITLTDVEISPDYAHAKVFFTSMTGEESVPEILQGLRRASGFLRREL
GRRVRIHTTPELHFHYDRSVEEGSRLSRLIDDAVREDEIRHRDDDN
>Mature_125_residues
PKEYSRSQRVVEQIRRELAELIRLEVKDPRVGFITLTDVEISPDYAHAKVFFTSMTGEESVPEILQGLRRASGFLRRELG
RRVRIHTTPELHFHYDRSVEEGSRLSRLIDDAVREDEIRHRDDDN

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=129, Percent_Identity=41.0852713178295, Blast_Score=103, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_AZOSB (A1K7B8)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_933610.1
- ProteinModelPortal:   A1K7B8
- SMR:   A1K7B8
- STRING:   A1K7B8
- GeneID:   4610038
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo2106
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   A1K7B8
- ProtClustDB:   PRK00521
- BioCyc:   ASP62928:AZO2106-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14845; Mature: 14714

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKEYSRSQRVVEQIRRELAELIRLEVKDPRVGFITLTDVEISPDYAHAKVFFTSMTGEE
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC
SVPEILQGLRRASGFLRRELGRRVRIHTTPELHFHYDRSVEEGSRLSRLIDDAVREDEIR
CHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHC
HRDDDN
CCCCCC
>Mature Secondary Structure 
PKEYSRSQRVVEQIRRELAELIRLEVKDPRVGFITLTDVEISPDYAHAKVFFTSMTGEE
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC
SVPEILQGLRRASGFLRRELGRRVRIHTTPELHFHYDRSVEEGSRLSRLIDDAVREDEIR
CHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHC
HRDDDN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA