| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is padB [H]
Identifier: 119898237
GI number: 119898237
Start: 2136465
End: 2139191
Strand: Direct
Name: padB [H]
Synonym: azo1946
Alternate gene names: 119898237
Gene position: 2136465-2139191 (Clockwise)
Preceding gene: 119898230
Following gene: 119898238
Centisome position: 48.82
GC content: 67.58
Gene sequence:
>2727_bases ATGAGCAGCACGCGCAAGGTGTCCACCTACTGCTACCAGTGCGTCAATGGCCCGGACATGCTCACCGTCGAGGTGACCGA CGGCGTGGCGACCACGGTGGCGCCCAATTTCGCCGCCAAGGGCTACCACCCGGCGGACGGCAAGGTCTGCGTCAAGCCCT ACGGCCTGGTGCAGAAGATCTACAACCCCAACCGCATCCTCAAGCCGATGAAGCGGACCAACCCGCGCAAAGGCCGCGGC GAGGACCCCGGCTTCGTCGAGATCGAATGGGAAGAGGCGCTCGACACCATCGCCGCGAGGCTCAATGCCATCCGTGCCGA AAGCCTGGTCGATGAGGACGGCTATCCGCGCGTCGCCTTCACCACCGGCGGTGCGGCGACGCCCTATTTCTACATGGGCA CCTTCGCCTCCTTCCTTGCCGCCTGGGGGCCCGTGGACCAGAGCCTGGGCGCGGGCGGCACGGTCAAGTGCTATCACACC GAGCACGTCTACGGCGAGCTGTGGCACCGCGCCTTCACCGTCTGTCCGGACACGCCGCGCTGCGAATACATCGTCTCCTT CGGCAACAACATCGACGCGTCGGGCGGCGTCACCAGCGTGCGCCGCCATGCGGATGCACGGGCGCGCGGCATCAAGCGGG TGCAGATCGAGCCGCACCTGTCGATCACCGGCGCCTCTGCGAGCGAATGGATTCCGATCCGGCCCAAGACCGATCCGGCC TTCCTGTACGCGATGCTGCACGTGCTGCTGCACGAGCGTCCGCTGGCGGATCTCGACCGCCCCTTCCTCAAGGCGCGCAC CGGCTCGCCCTACCTGGTCGGCCCCAACGGCTTCTTCCTGCGCGATCCCGCCAGCCGCAAGCCGCTGATCTGGGACGCGG GCAGCCAGCGCGCGGTGCCCTTCGATACGCCGGGGGCCGATCCCGCGCTGCTCGGCCGCTACAGCCTGAGCGGGCTGGAA GTGGGCGCCGACGGCAAGGAGTGGATGCACGGTGCGGTCGAGGCGACCACCGCCTTCGAGGTGACGCGCGAGATGGTGGC GCCGCACACGCCGGAATGGGCGGCGCCGATCACCGACGTGCCTGCGGCGACGATACGCCGCATCGCCAATGAGTTCGTCG AGCATGCCCGCATCGGCGAGACCATCGAGTTCGAAGGCCGCACCCTGCCCTTCCGCCCGGTGGCGGTGATGCTGGGCAAA AGCGTGAACAACGGCTGGGGCGCCTACGAATGCGTGTGGGCGCGCACCATGCTGATGGTGCTGGTGGGCGGCCTGGAGGT GCCGGGCGGGCTGCTCGGCAGCACGGTGCACATCTCCGGCATGGACTTCGACCGCATGGGCTCGGTCGCGCCCAGCCCGG ACGGCTTCCTCGACTACCCCTTCAACCCCACCGACAAGGAGCACTGGGCGGCGCAGCCGCAGGTGCGCCACGGCCACACC ACGCTGATCCCCATCATCGGCGGCGGCCTCACCAGCCAGCTGATGGGCTCCACCGTGCTCACGTGGATGCGCCTGCAGGG CCGCGCGGCCGACAGCTGGGGCAAGCCCAAGCCGCCCGACCTGTGGTTCGTCTATCGCTGCAACCCGAACATCTCGTTCT CCGAGACGGACAAGATGGGCGAGACGATGGCGACCTTCCCCTTCACCGTCGCCTTCTCCTACACCCAGGACGAGACCAAC CACTTCGCCGACCTGGTGCTGCCCGAGGCCATCGACCTCGAAAGCACCCAGCTCATCCGCCTCGGCGGCACCCACTACTT CGAGCAGTTCTGGGACAGCCAGGGCTGGGTGCTGCGCCAGCCGGTGGTGGAGCCGCGCGGCGAGGCCAGGGACTTCACCT GGATTTCGACCGAGCTGGCCAAGCGCACCGGCCTGCTCGAGGCCTACAACTCCATGATCAATATGGGCGCCGCCGGCCTG CCGCTGAAAACCGACAAGTACGACTTCTCGCTCGACGTGAGCAAGCCGCATACGGTGGAGGAAACCTGGGACGCGGTGTG CCGCGCCGCGAGCGCCGACGTGACCGACGGCGCCGCCAGCGACGGCCTCGCCTGGTTCAAGGAAAACGGCTTCCGCGTCA AACCCTTCCCCAAGATCAACTGGTACCTCTACCCCAGGATGGAGGACATGGGCCTGCGTTTCGAGCTGCCCTACCAGGAG CGCGTGTTGCGCATCGGCCAGGAACTCGCCGCGCGCCTGCACGAGCAGGGCGTCACCTGGTGGGACCGCCAGCTGCACGA ATACGAGCCGCTGCCCACCTGGAAGGACCTCAACAAGCTGTGGGCCGACGCCTACGAGCGCGCCTACAAGATCAAGGCCA GCGACTACCCGTTCTGGCTGCTCACCGCGCGCAGCATGCAGTACGCGTGGGGCGGCAACGTCAGCCTGCAGATGATCCGC GAGGTGGCCGCCAACGTCGCCGGCCACGACGGAATCATGATCAACGCCAAAGTGGCCGACGAGATGGGCATCGCCCAGGG CGACCGCATCGAGGTCACCTCGCCGGTCGGTGTCACCAGCGGCCGCGCGCTGCTGCGCCAGGGCGTGCGGCCCGACACGG TGGTGATGGTCGGCCAGTTCGGCCACTGGAAAACGCCTTACGCCAAGGACCTCGACATGCCCAGCCTCAACAACCTGGTG CCGATGAACATGGACCTGGTGGATGGCACCGGTTCGGCGGTCGACGCCGTCCTCGTCAAGATCAAGAAGATCGGGAGCAA GCGATGA
Upstream 100 bases:
>100_bases GATAGTGGCTATGTCGCCCAGTTCATAAGCTCCCTGCCGTAGTGCGCCCGGTTTCGGCCGCGGTCGCATCCCAACGACCT GCAAGGAGCATCGCAGCCCC
Downstream 100 bases:
>100_bases CCCGCTACGTAATGGTCGCCGACCTCAACCGCTGCGTCGGCTGCCAGACCTGTACCGCCGCCTGCAAGCACACCAATGCC ACGCCGCCGGGCGTGCAATG
Product: phenylacetyl-CoA:acceptor oxidoreductase
Products: Reduced form of N-Oxide compounds [C]
Alternate protein names: NA
Number of amino acids: Translated: 908; Mature: 907
Protein sequence:
>908_residues MSSTRKVSTYCYQCVNGPDMLTVEVTDGVATTVAPNFAAKGYHPADGKVCVKPYGLVQKIYNPNRILKPMKRTNPRKGRG EDPGFVEIEWEEALDTIAARLNAIRAESLVDEDGYPRVAFTTGGAATPYFYMGTFASFLAAWGPVDQSLGAGGTVKCYHT EHVYGELWHRAFTVCPDTPRCEYIVSFGNNIDASGGVTSVRRHADARARGIKRVQIEPHLSITGASASEWIPIRPKTDPA FLYAMLHVLLHERPLADLDRPFLKARTGSPYLVGPNGFFLRDPASRKPLIWDAGSQRAVPFDTPGADPALLGRYSLSGLE VGADGKEWMHGAVEATTAFEVTREMVAPHTPEWAAPITDVPAATIRRIANEFVEHARIGETIEFEGRTLPFRPVAVMLGK SVNNGWGAYECVWARTMLMVLVGGLEVPGGLLGSTVHISGMDFDRMGSVAPSPDGFLDYPFNPTDKEHWAAQPQVRHGHT TLIPIIGGGLTSQLMGSTVLTWMRLQGRAADSWGKPKPPDLWFVYRCNPNISFSETDKMGETMATFPFTVAFSYTQDETN HFADLVLPEAIDLESTQLIRLGGTHYFEQFWDSQGWVLRQPVVEPRGEARDFTWISTELAKRTGLLEAYNSMINMGAAGL PLKTDKYDFSLDVSKPHTVEETWDAVCRAASADVTDGAASDGLAWFKENGFRVKPFPKINWYLYPRMEDMGLRFELPYQE RVLRIGQELAARLHEQGVTWWDRQLHEYEPLPTWKDLNKLWADAYERAYKIKASDYPFWLLTARSMQYAWGGNVSLQMIR EVAANVAGHDGIMINAKVADEMGIAQGDRIEVTSPVGVTSGRALLRQGVRPDTVVMVGQFGHWKTPYAKDLDMPSLNNLV PMNMDLVDGTGSAVDAVLVKIKKIGSKR
Sequences:
>Translated_908_residues MSSTRKVSTYCYQCVNGPDMLTVEVTDGVATTVAPNFAAKGYHPADGKVCVKPYGLVQKIYNPNRILKPMKRTNPRKGRG EDPGFVEIEWEEALDTIAARLNAIRAESLVDEDGYPRVAFTTGGAATPYFYMGTFASFLAAWGPVDQSLGAGGTVKCYHT EHVYGELWHRAFTVCPDTPRCEYIVSFGNNIDASGGVTSVRRHADARARGIKRVQIEPHLSITGASASEWIPIRPKTDPA FLYAMLHVLLHERPLADLDRPFLKARTGSPYLVGPNGFFLRDPASRKPLIWDAGSQRAVPFDTPGADPALLGRYSLSGLE VGADGKEWMHGAVEATTAFEVTREMVAPHTPEWAAPITDVPAATIRRIANEFVEHARIGETIEFEGRTLPFRPVAVMLGK SVNNGWGAYECVWARTMLMVLVGGLEVPGGLLGSTVHISGMDFDRMGSVAPSPDGFLDYPFNPTDKEHWAAQPQVRHGHT TLIPIIGGGLTSQLMGSTVLTWMRLQGRAADSWGKPKPPDLWFVYRCNPNISFSETDKMGETMATFPFTVAFSYTQDETN HFADLVLPEAIDLESTQLIRLGGTHYFEQFWDSQGWVLRQPVVEPRGEARDFTWISTELAKRTGLLEAYNSMINMGAAGL PLKTDKYDFSLDVSKPHTVEETWDAVCRAASADVTDGAASDGLAWFKENGFRVKPFPKINWYLYPRMEDMGLRFELPYQE RVLRIGQELAARLHEQGVTWWDRQLHEYEPLPTWKDLNKLWADAYERAYKIKASDYPFWLLTARSMQYAWGGNVSLQMIR EVAANVAGHDGIMINAKVADEMGIAQGDRIEVTSPVGVTSGRALLRQGVRPDTVVMVGQFGHWKTPYAKDLDMPSLNNLV PMNMDLVDGTGSAVDAVLVKIKKIGSKR >Mature_907_residues SSTRKVSTYCYQCVNGPDMLTVEVTDGVATTVAPNFAAKGYHPADGKVCVKPYGLVQKIYNPNRILKPMKRTNPRKGRGE DPGFVEIEWEEALDTIAARLNAIRAESLVDEDGYPRVAFTTGGAATPYFYMGTFASFLAAWGPVDQSLGAGGTVKCYHTE HVYGELWHRAFTVCPDTPRCEYIVSFGNNIDASGGVTSVRRHADARARGIKRVQIEPHLSITGASASEWIPIRPKTDPAF LYAMLHVLLHERPLADLDRPFLKARTGSPYLVGPNGFFLRDPASRKPLIWDAGSQRAVPFDTPGADPALLGRYSLSGLEV GADGKEWMHGAVEATTAFEVTREMVAPHTPEWAAPITDVPAATIRRIANEFVEHARIGETIEFEGRTLPFRPVAVMLGKS VNNGWGAYECVWARTMLMVLVGGLEVPGGLLGSTVHISGMDFDRMGSVAPSPDGFLDYPFNPTDKEHWAAQPQVRHGHTT LIPIIGGGLTSQLMGSTVLTWMRLQGRAADSWGKPKPPDLWFVYRCNPNISFSETDKMGETMATFPFTVAFSYTQDETNH FADLVLPEAIDLESTQLIRLGGTHYFEQFWDSQGWVLRQPVVEPRGEARDFTWISTELAKRTGLLEAYNSMINMGAAGLP LKTDKYDFSLDVSKPHTVEETWDAVCRAASADVTDGAASDGLAWFKENGFRVKPFPKINWYLYPRMEDMGLRFELPYQER VLRIGQELAARLHEQGVTWWDRQLHEYEPLPTWKDLNKLWADAYERAYKIKASDYPFWLLTARSMQYAWGGNVSLQMIRE VAANVAGHDGIMINAKVADEMGIAQGDRIEVTSPVGVTSGRALLRQGVRPDTVVMVGQFGHWKTPYAKDLDMPSLNNLVP MNMDLVDGTGSAVDAVLVKIKKIGSKR
Specific function: Oxidoreductase which produces hydrogen sulfide from thiosulfate (Potential) [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 - InterPro: IPR006311 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 100679; Mature: 100547
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTRKVSTYCYQCVNGPDMLTVEVTDGVATTVAPNFAAKGYHPADGKVCVKPYGLVQKI CCCCHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEEECCHHHHHHH YNPNRILKPMKRTNPRKGRGEDPGFVEIEWEEALDTIAARLNAIRAESLVDEDGYPRVAF CCCHHHHCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE TTGGAATPYFYMGTFASFLAAWGPVDQSLGAGGTVKCYHTEHVYGELWHRAFTVCPDTPR ECCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECHHHHHHHHHHEEEECCCCCC CEYIVSFGNNIDASGGVTSVRRHADARARGIKRVQIEPHLSITGASASEWIPIRPKTDPA CEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCEEECCCCCCHH FLYAMLHVLLHERPLADLDRPFLKARTGSPYLVGPNGFFLRDPASRKPLIWDAGSQRAVP HHHHHHHHHHCCCCCHHCCCHHHHHCCCCCEEECCCCEEEECCCCCCCEEEECCCCCCCC FDTPGADPALLGRYSLSGLEVGADGKEWMHGAVEATTAFEVTREMVAPHTPEWAAPITDV CCCCCCCHHHEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PAATIRRIANEFVEHARIGETIEFEGRTLPFRPVAVMLGKSVNNGWGAYECVWARTMLMV CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH LVGGLEVPGGLLGSTVHISGMDFDRMGSVAPSPDGFLDYPFNPTDKEHWAAQPQVRHGHT HHCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCE TLIPIIGGGLTSQLMGSTVLTWMRLQGRAADSWGKPKPPDLWFVYRCNPNISFSETDKMG EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCC ETMATFPFTVAFSYTQDETNHFADLVLPEAIDLESTQLIRLGGTHYFEQFWDSQGWVLRQ CCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEC PVVEPRGEARDFTWISTELAKRTGLLEAYNSMINMGAAGLPLKTDKYDFSLDVSKPHTVE CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHH ETWDAVCRAASADVTDGAASDGLAWFKENGFRVKPFPKINWYLYPRMEDMGLRFELPYQE HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCEEECCCCCEEEEECCCHHCCCCEEECCHHH RVLRIGQELAARLHEQGVTWWDRQLHEYEPLPTWKDLNKLWADAYERAYKIKASDYPFWL HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEECCCCCEEE LTARSMQYAWGGNVSLQMIREVAANVAGHDGIMINAKVADEMGIAQGDRIEVTSPVGVTS EEECCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCEEEEECCCCCCC GRALLRQGVRPDTVVMVGQFGHWKTPYAKDLDMPSLNNLVPMNMDLVDGTGSAVDAVLVK CHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHH IKKIGSKR HHHHCCCC >Mature Secondary Structure SSTRKVSTYCYQCVNGPDMLTVEVTDGVATTVAPNFAAKGYHPADGKVCVKPYGLVQKI CCCHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEEECCHHHHHHH YNPNRILKPMKRTNPRKGRGEDPGFVEIEWEEALDTIAARLNAIRAESLVDEDGYPRVAF CCCHHHHCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE TTGGAATPYFYMGTFASFLAAWGPVDQSLGAGGTVKCYHTEHVYGELWHRAFTVCPDTPR ECCCCCCCHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEECHHHHHHHHHHEEEECCCCCC CEYIVSFGNNIDASGGVTSVRRHADARARGIKRVQIEPHLSITGASASEWIPIRPKTDPA CEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCEEECCCCCCHH FLYAMLHVLLHERPLADLDRPFLKARTGSPYLVGPNGFFLRDPASRKPLIWDAGSQRAVP HHHHHHHHHHCCCCCHHCCCHHHHHCCCCCEEECCCCEEEECCCCCCCEEEECCCCCCCC FDTPGADPALLGRYSLSGLEVGADGKEWMHGAVEATTAFEVTREMVAPHTPEWAAPITDV CCCCCCCHHHEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PAATIRRIANEFVEHARIGETIEFEGRTLPFRPVAVMLGKSVNNGWGAYECVWARTMLMV CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH LVGGLEVPGGLLGSTVHISGMDFDRMGSVAPSPDGFLDYPFNPTDKEHWAAQPQVRHGHT HHCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCE TLIPIIGGGLTSQLMGSTVLTWMRLQGRAADSWGKPKPPDLWFVYRCNPNISFSETDKMG EEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCC ETMATFPFTVAFSYTQDETNHFADLVLPEAIDLESTQLIRLGGTHYFEQFWDSQGWVLRQ CCCCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCEEEC PVVEPRGEARDFTWISTELAKRTGLLEAYNSMINMGAAGLPLKTDKYDFSLDVSKPHTVE CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHH ETWDAVCRAASADVTDGAASDGLAWFKENGFRVKPFPKINWYLYPRMEDMGLRFELPYQE HHHHHHHHHCCCCCCCCCCCCCCHHHHCCCEEECCCCCEEEEECCCHHCCCCEEECCHHH RVLRIGQELAARLHEQGVTWWDRQLHEYEPLPTWKDLNKLWADAYERAYKIKASDYPFWL HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEECCCCCEEE LTARSMQYAWGGNVSLQMIREVAANVAGHDGIMINAKVADEMGIAQGDRIEVTSPVGVTS EEECCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCEEEEECCCCCCC GRALLRQGVRPDTVVMVGQFGHWKTPYAKDLDMPSLNNLVPMNMDLVDGTGSAVDAVLVK CHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHH IKKIGSKR HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: Fe; Mo [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7751291; 11677609; 7737516 [H]