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The map label for this gene is padC [H]

Identifier: 119898238

GI number: 119898238

Start: 2139188

End: 2139835

Strand: Direct

Name: padC [H]

Synonym: azo1947

Alternate gene names: 119898238

Gene position: 2139188-2139835 (Clockwise)

Preceding gene: 119898237

Following gene: 119898239

Centisome position: 48.88

GC content: 65.9

Gene sequence:

>648_bases
ATGACCCGCTACGTAATGGTCGCCGACCTCAACCGCTGCGTCGGCTGCCAGACCTGTACCGCCGCCTGCAAGCACACCAA
TGCCACGCCGCCGGGCGTGCAATGGCGCAAGGTGCTGGATGTGGAGATGGGCGAATACCCCAATGTCGAACGCCTCTTCA
TGCCGGTCGGCTGCCAGCACTGCTCCGACCCGCCGTGCATGGAGGTCTGCCCGAGCACCGCCACCGGCCAGCGCAAGGAT
GGCATCGTCACCATCGACTACGACATCTGCATCGGCTGCTCCTACTGCGCGGTGGCCTGCCCCTACCAGGCGCGCTACAA
GGTGGAAACGCCGCGCTTCGCCTACGGCGAGCAGCCGACCGAAACCGAGGCGCTGCGCTTCGACGAAGGCCGCATCGGCG
TCGCGCAGAAATGCACCTTCTGTTCGGACCGCGTCGATGCCGGCCTCGCCCGCGGCCTGAAGCCCGGCGTCGATCCGGAT
GCGACACCCGCCTGCGCCAACGCCTGCATCGCCAACGCGCTCACCTTCGGCGACCTCGAAGACCCCGACAGCAATGTCTC
GAAGCTGCTCACCGACAACACCTGGTTCCGCATGCACGAGGAACTGGGCACCGAGCCGGGCTTCTTCTACCTCTGGAACG
AGAAATGA

Upstream 100 bases:

>100_bases
GCCTCAACAACCTGGTGCCGATGAACATGGACCTGGTGGATGGCACCGGTTCGGCGGTCGACGCCGTCCTCGTCAAGATC
AAGAAGATCGGGAGCAAGCG

Downstream 100 bases:

>100_bases
ACCCAAGCAAGTTCGGACGTTTCGGCACCGCCCACCAGACCAGCTGGGATTGGCGGGCCGCGGGCAACTTCATCGGCGGC
GGCAGCGGTTCGGCGCTGAT

Product: phenylacetyl-CoA:acceptor oxidoreductase

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MTRYVMVADLNRCVGCQTCTAACKHTNATPPGVQWRKVLDVEMGEYPNVERLFMPVGCQHCSDPPCMEVCPSTATGQRKD
GIVTIDYDICIGCSYCAVACPYQARYKVETPRFAYGEQPTETEALRFDEGRIGVAQKCTFCSDRVDAGLARGLKPGVDPD
ATPACANACIANALTFGDLEDPDSNVSKLLTDNTWFRMHEELGTEPGFFYLWNEK

Sequences:

>Translated_215_residues
MTRYVMVADLNRCVGCQTCTAACKHTNATPPGVQWRKVLDVEMGEYPNVERLFMPVGCQHCSDPPCMEVCPSTATGQRKD
GIVTIDYDICIGCSYCAVACPYQARYKVETPRFAYGEQPTETEALRFDEGRIGVAQKCTFCSDRVDAGLARGLKPGVDPD
ATPACANACIANALTFGDLEDPDSNVSKLLTDNTWFRMHEELGTEPGFFYLWNEK
>Mature_214_residues
TRYVMVADLNRCVGCQTCTAACKHTNATPPGVQWRKVLDVEMGEYPNVERLFMPVGCQHCSDPPCMEVCPSTATGQRKDG
IVTIDYDICIGCSYCAVACPYQARYKVETPRFAYGEQPTETEALRFDEGRIGVAQKCTFCSDRVDAGLARGLKPGVDPDA
TPACANACIANALTFGDLEDPDSNVSKLLTDNTWFRMHEELGTEPGFFYLWNEK

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=210, Percent_Identity=35.2380952380952, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI226510944, Length=214, Percent_Identity=30.3738317757009, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1787122, Length=188, Percent_Identity=34.0425531914894, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787872, Length=189, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI87082114, Length=192, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789370, Length=243, Percent_Identity=27.9835390946502, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787749, Length=204, Percent_Identity=29.4117647058824, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790326, Length=203, Percent_Identity=28.0788177339901, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1789079, Length=104, Percent_Identity=39.4230769230769, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1789067, Length=190, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787740, Length=137, Percent_Identity=29.9270072992701, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787478, Length=105, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1788811, Length=176, Percent_Identity=27.8409090909091, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87082180, Length=189, Percent_Identity=26.4550264550265, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23736; Mature: 23605

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
7.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRYVMVADLNRCVGCQTCTAACKHTNATPPGVQWRKVLDVEMGEYPNVERLFMPVGCQH
CCEEEEEECCHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHEEEEECCCCC
CSDPPCMEVCPSTATGQRKDGIVTIDYDICIGCSYCAVACPYQARYKVETPRFAYGEQPT
CCCCCHHHHCCCCCCCCCCCCEEEEEHHHEECCCHHHHCCCCCCEEEECCCCCCCCCCCC
ETEALRFDEGRIGVAQKCTFCSDRVDAGLARGLKPGVDPDATPACANACIANALTFGDLE
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
DPDSNVSKLLTDNTWFRMHEELGTEPGFFYLWNEK
CCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCC
>Mature Secondary Structure 
TRYVMVADLNRCVGCQTCTAACKHTNATPPGVQWRKVLDVEMGEYPNVERLFMPVGCQH
CEEEEEECCHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHEEEEECCCCC
CSDPPCMEVCPSTATGQRKDGIVTIDYDICIGCSYCAVACPYQARYKVETPRFAYGEQPT
CCCCCHHHHCCCCCCCCCCCCEEEEEHHHEECCCHHHHCCCCCCEEEECCCCCCCCCCCC
ETEALRFDEGRIGVAQKCTFCSDRVDAGLARGLKPGVDPDATPACANACIANALTFGDLE
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
DPDSNVSKLLTDNTWFRMHEELGTEPGFFYLWNEK
CCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]