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The map label for this gene is rnhB

Identifier: 119898186

GI number: 119898186

Start: 2079133

End: 2079747

Strand: Reverse

Name: rnhB

Synonym: azo1895

Alternate gene names: 119898186

Gene position: 2079747-2079133 (Counterclockwise)

Preceding gene: 119898187

Following gene: 119898185

Centisome position: 47.53

GC content: 71.54

Gene sequence:

>615_bases
GTGCCAGCCAGTCAGCGTCTCCGCCTGATCTGCGGGGTCGACGAAGCCGGCCGCGGCCCGCTATGCGGCCCCGTAGTCGC
CGCGGCCGTCATCCTCGACCCCGCGCGCCCGATCGACGGCCTGGCCGACTCCAAGAAGCTCACGGAACGCGCGCGCGATC
GCCTCGCGCCCTTGATCCGCGAGCGGGCGCTGGCCTGGGCCGTGGCCGAGGCCAGCGTCGAGGAAATCGACCGCCTCAAC
ATCCTCCACGCCACCATGCTCGCCATGCAGCGCGCGGTCAGCGCGCTGTCGGTGCTGCCCGGCGAGGTCCTGATCGACGG
CAACCGCTGCCCCACGCTGGCGGTACCGGCTCGCGCGGTAGTGGGCGGGGACGCCAGCGAACCTGCGATCTCCGCCGCGT
CCATCCTCGCCAAGACGGTGCGCGACGCCGGCATGAAGGCATTGCACGAGCAGTACCCGCACTACGGCCTGGCCGACCAC
AAGGGCTACCCGACGGCGGGCCATCTCGCCGCGCTCCGCCGCCACGGCATCGCGGACTTCTATCGCCGCAGCTTTGGCCC
GGTGCGCGAACTGCTGCAGAACCCACCCCTGTGGGTCGAGGAAGAAAGCGCATGA

Upstream 100 bases:

>100_bases
CATTGACCGAACGCTTCACCGCACTCCATCACAGCCTGCGGCAAAACACCGCCGAAAAGGCCGCCGCAGCCGTCCTGCCG
TATCTATCGAGTAGCGCATC

Downstream 100 bases:

>100_bases
CCTTCCACCACCTGATGCTTTTTCTGCATCTGCTCGGCGTCACCGTATGGGTGGGCGGCATGGCTTTCGCGTGGGGCTGC
CTGCGGCCCGCCGCCATGGC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MPASQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRERALAWAVAEASVEEIDRLN
ILHATMLAMQRAVSALSVLPGEVLIDGNRCPTLAVPARAVVGGDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADH
KGYPTAGHLAALRRHGIADFYRRSFGPVRELLQNPPLWVEEESA

Sequences:

>Translated_204_residues
MPASQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRERALAWAVAEASVEEIDRLN
ILHATMLAMQRAVSALSVLPGEVLIDGNRCPTLAVPARAVVGGDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADH
KGYPTAGHLAALRRHGIADFYRRSFGPVRELLQNPPLWVEEESA
>Mature_203_residues
PASQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIRERALAWAVAEASVEEIDRLNI
LHATMLAMQRAVSALSVLPGEVLIDGNRCPTLAVPARAVVGGDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADHK
GYPTAGHLAALRRHGIADFYRRSFGPVRELLQNPPLWVEEESA

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family

Homologues:

Organism=Escherichia coli, GI1786380, Length=185, Percent_Identity=63.2432432432432, Blast_Score=227, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNH2_AZOSB (A1K6Q7)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_933399.1
- ProteinModelPortal:   A1K6Q7
- SMR:   A1K6Q7
- STRING:   A1K6Q7
- GeneID:   4607121
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo1895
- eggNOG:   COG0164
- HOGENOM:   HBG584843
- OMA:   IICGVDE
- PhylomeDB:   A1K6Q7
- ProtClustDB:   PRK00015
- BioCyc:   ASP62928:AZO1895-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00052_B
- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337
- PANTHER:   PTHR10954

Pfam domain/function: PF01351 RNase_HII; SSF53098 RNaseH_fold

EC number: =3.1.26.4

Molecular weight: Translated: 21842; Mature: 21711

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPASQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIR
CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ERALAWAVAEASVEEIDRLNILHATMLAMQRAVSALSVLPGEVLIDGNRCPTLAVPARAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCHHH
VGGDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADHKGYPTAGHLAALRRHGIADF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
YRRSFGPVRELLQNPPLWVEEESA
HHHCCHHHHHHHCCCCCCEECCCC
>Mature Secondary Structure 
PASQRLRLICGVDEAGRGPLCGPVVAAAVILDPARPIDGLADSKKLTERARDRLAPLIR
CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
ERALAWAVAEASVEEIDRLNILHATMLAMQRAVSALSVLPGEVLIDGNRCPTLAVPARAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEECCCHHH
VGGDASEPAISAASILAKTVRDAGMKALHEQYPHYGLADHKGYPTAGHLAALRRHGIADF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCHHHH
YRRSFGPVRELLQNPPLWVEEESA
HHHCCHHHHHHHCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA