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The map label for this gene is rbcR [H]

Identifier: 119898006

GI number: 119898006

Start: 1880629

End: 1881549

Strand: Direct

Name: rbcR [H]

Synonym: azo1715

Alternate gene names: 119898006

Gene position: 1880629-1881549 (Clockwise)

Preceding gene: 119898004

Following gene: 119898007

Centisome position: 42.98

GC content: 67.64

Gene sequence:

>921_bases
ATGGCCGATCGCAGGTTGCAGGTCTTCCATGCCGTGGCAAAACACGGCTCGTTCACCCGGGCGGCAGAGCATCTGTTCAT
GACCCAGCCCGCGGTCACCTTCCAGATCAAGCAGCTGGAAGAGCACTACAACACGCGGCTGCTGGAACGCGGCCACGGCA
AGATTTCCCTGACCCCGGCCGGTGAGCTGGTGCTCGCTTACGCCGAGCGCATCCTCGGCCTGTCCGAGGAGCTGGAGTCG
CGCGTGTCCGAGCTGACCGACGAGCTGGCCGGCGTGCTCAACATCGGCACCAGCACCACGATCGCCGCGTACTGGCTGCC
GACGCTGCTCGAGAGCTTCAAGCGGCGCTACCCGCGCGTGATCCCGCGCGTCGTGGTCGGCAATTCGCAACTCACCGAAG
ACCGCGTGGCCGCGCGCGAACTCGACCTCGGCCTGATCGAAATCGTCACCGAGCAGCCGGCGATCGAGCACCGCAGCGCC
GCCCGTGACGAGCTGATGGTGATCTGCCAGCCCTCGCATCCGCTCGCCAAGGCCAAATCGCTGCGCGCCTCCGATCTGAT
CGCCTATCCCTTCATCACCCGCGATCCGGGCAACGCCATCCGCGAACTCGCCGAGGAGTTCTTCGAGGCTGCCGGGATCA
GCATGAACGAGGTGACGCTGTGCGCCGAGCTGGGCAGCCTGGCCACCGTCAAGCTGCTCGCGGCCGAAGGGCTGGGCTAT
GCGATCGCCTCGCGCGCGGCCATCCTGCGCGACCTGCGCGAGGGCCGGATCGCCGCGGTGCCGCTCGAGCCGCGCCTGTA
TACCCCGCTCGAAGTCATCATCCCGCGCGACAAGTTCCGCTCGCGCCTGATCACCACCTTCGCCGACCATGCCTGTGAGG
TGCTCGCCGCGCTCGCCGGCGAGTTCGCCACCGACCACTGA

Upstream 100 bases:

>100_bases
AACGTGTTGCGACGTGCTACCGGGCCGCCGACAGGCGGAAACGACGCGAAAGCGGCAACTGTGCTCTAATTACGGGCATA
AATATGCCTTATCACTAATC

Downstream 100 bases:

>100_bases
TGGCCAAGGCGAAGACGGTTTTCGTCTGCACCGAATGCGGTGCGCAGGCGCTGCGCTGGCAGGGCCAGTGTCCGCAATGC
AATGCCTGGAACACCCTGGT

Product: RuBisCO operon transcriptional regulator (RbcR)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MADRRLQVFHAVAKHGSFTRAAEHLFMTQPAVTFQIKQLEEHYNTRLLERGHGKISLTPAGELVLAYAERILGLSEELES
RVSELTDELAGVLNIGTSTTIAAYWLPTLLESFKRRYPRVIPRVVVGNSQLTEDRVAARELDLGLIEIVTEQPAIEHRSA
ARDELMVICQPSHPLAKAKSLRASDLIAYPFITRDPGNAIRELAEEFFEAAGISMNEVTLCAELGSLATVKLLAAEGLGY
AIASRAAILRDLREGRIAAVPLEPRLYTPLEVIIPRDKFRSRLITTFADHACEVLAALAGEFATDH

Sequences:

>Translated_306_residues
MADRRLQVFHAVAKHGSFTRAAEHLFMTQPAVTFQIKQLEEHYNTRLLERGHGKISLTPAGELVLAYAERILGLSEELES
RVSELTDELAGVLNIGTSTTIAAYWLPTLLESFKRRYPRVIPRVVVGNSQLTEDRVAARELDLGLIEIVTEQPAIEHRSA
ARDELMVICQPSHPLAKAKSLRASDLIAYPFITRDPGNAIRELAEEFFEAAGISMNEVTLCAELGSLATVKLLAAEGLGY
AIASRAAILRDLREGRIAAVPLEPRLYTPLEVIIPRDKFRSRLITTFADHACEVLAALAGEFATDH
>Mature_305_residues
ADRRLQVFHAVAKHGSFTRAAEHLFMTQPAVTFQIKQLEEHYNTRLLERGHGKISLTPAGELVLAYAERILGLSEELESR
VSELTDELAGVLNIGTSTTIAAYWLPTLLESFKRRYPRVIPRVVVGNSQLTEDRVAARELDLGLIEIVTEQPAIEHRSAA
RDELMVICQPSHPLAKAKSLRASDLIAYPFITRDPGNAIRELAEEFFEAAGISMNEVTLCAELGSLATVKLLAAEGLGYA
IASRAAILRDLREGRIAAVPLEPRLYTPLEVIIPRDKFRSRLITTFADHACEVLAALAGEFATDH

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=30.8219178082192, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI157672245, Length=213, Percent_Identity=31.924882629108, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788887, Length=264, Percent_Identity=28.7878787878788, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082132, Length=262, Percent_Identity=25.1908396946565, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789204, Length=294, Percent_Identity=27.891156462585, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787806, Length=284, Percent_Identity=26.4084507042254, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI145693105, Length=201, Percent_Identity=26.3681592039801, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787879, Length=242, Percent_Identity=29.3388429752066, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=257, Percent_Identity=26.8482490272374, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790399, Length=285, Percent_Identity=24.9122807017544, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=25.4237288135593, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788706, Length=173, Percent_Identity=30.0578034682081, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=207, Percent_Identity=28.0193236714976, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=28.7937743190661, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=261, Percent_Identity=24.1379310344828, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=247, Percent_Identity=25.1012145748988, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788297, Length=250, Percent_Identity=24.4, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790262, Length=296, Percent_Identity=22.2972972972973, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=116, Percent_Identity=29.3103448275862, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=244, Percent_Identity=27.0491803278689, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786401, Length=115, Percent_Identity=34.7826086956522, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=124, Percent_Identity=29.8387096774194, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI2367136, Length=242, Percent_Identity=25.6198347107438, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33802; Mature: 33671

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRRLQVFHAVAKHGSFTRAAEHLFMTQPAVTFQIKQLEEHYNTRLLERGHGKISLTPA
CCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCC
GELVLAYAERILGLSEELESRVSELTDELAGVLNIGTSTTIAAYWLPTLLESFKRRYPRV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
IPRVVVGNSQLTEDRVAARELDLGLIEIVTEQPAIEHRSAARDELMVICQPSHPLAKAKS
CCHHEECCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCHHHHHH
LRASDLIAYPFITRDPGNAIRELAEEFFEAAGISMNEVTLCAELGSLATVKLLAAEGLGY
CCHHCEEEECCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCH
AIASRAAILRDLREGRIAAVPLEPRLYTPLEVIIPRDKFRSRLITTFADHACEVLAALAG
HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHH
EFATDH
HHCCCC
>Mature Secondary Structure 
ADRRLQVFHAVAKHGSFTRAAEHLFMTQPAVTFQIKQLEEHYNTRLLERGHGKISLTPA
CCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCC
GELVLAYAERILGLSEELESRVSELTDELAGVLNIGTSTTIAAYWLPTLLESFKRRYPRV
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
IPRVVVGNSQLTEDRVAARELDLGLIEIVTEQPAIEHRSAARDELMVICQPSHPLAKAKS
CCHHEECCCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCHHHHHH
LRASDLIAYPFITRDPGNAIRELAEEFFEAAGISMNEVTLCAELGSLATVKLLAAEGLGY
CCHHCEEEECCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCH
AIASRAAILRDLREGRIAAVPLEPRLYTPLEVIIPRDKFRSRLITTFADHACEVLAALAG
HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHEEECCHHHHHHHHHHHHHHHHHHHHHHHH
EFATDH
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]