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The map label for this gene is yciR [C]

Identifier: 119897962

GI number: 119897962

Start: 1833366

End: 1835738

Strand: Direct

Name: yciR [C]

Synonym: azo1671

Alternate gene names: 119897962

Gene position: 1833366-1835738 (Clockwise)

Preceding gene: 119897961

Following gene: 119897973

Centisome position: 41.9

GC content: 69.32

Gene sequence:

>2373_bases
ATGAACGCCGTCCGTGCGTGGTTGGCCCGCGTCCATCGCAACCGCTTTCCGCTGCTGGCGCTGATCGTGTTCGTCGGTTC
GCTGGCGGGCGTGATGCTGCTGTCGTCCAGCGTGGGACGGATCGCGTCGGCGCTGCCGCTGACCTCGCTGTACAAGGAGC
GCGACTTCGCGGCTTTGCTGACCGACGTGCTCGAACTCGAGGCCAAGCTAGAGCTTGCCGCCGCCGCGCCCACCCCGGAA
CACCTGCAACGGCTTGCCTTCGGCCTCGACATGGCCTTCCTGCGCCAGCGCGACAACGCCGCCAGCTACGGTGACTCGCG
CTTCGACGGCGTGGGCGAGATCAGCGCGCGGCTGGACGCCGTGCTGGAAGGTATCGACGCCAGCCTGCAGCGCGGCGACA
CCACGGCCGCGACGCTCGTGCGCCATGTCGACGAAGTCGCGGTGCTGCGGAGCGATCTCCAGCGCCTCAACGACGCGGTG
TTCCAGCGTTCGATGCAGCAGGCTTCCGCGCAGCGGGCCGCGCTGGACCGGCTCGGCAGCACCTCGACCGCGATGATCGT
GCTGCTCGGCGCCTTCGGCCTCGGCCTGGTGGCGATGCTGCTGCGCCAGCAGGGCAGCATCAAGGCGCTCGAAGAGCGCG
ACCGCGAACTGCGGCGCGGCGAGGCGGTGCAGCGCGAACTGCGCGAACGGCTGGAGAAGATCGCGGACAACGTGCCCGGG
GTGATCTACCAGTTCCGCTGCTGCCCGGACGGGCACATCGAATTCCCGTATGCCAGCCGCGGCCTGCACACCATGTTCGG
GATCACGCCCGAGGTCGCGGCGCGTGACGGTTCGGCGGTGCTGGCGGCAATCCACCCCGACGACCGCGAGGTGGTCGCCG
GCGCGATCCGCCGCTCGGCCGAAACCCTGCAGCCCTGGGTGTGCGAATACCGCATCGAACGCGCGGGCGGCGGCTACCGC
TGGATGAGCGTGTTCGCCACCCCGCAGCGCGAACGCGACGGCGCGACGCTGTGGCATGGCCACTGCCACGACGTCAGCTC
CTACAAGGCCGCCGAGGACGAGATCCGCCATCTCGCCTTCTACGATCCGCTGACCGGGCTGCCCAATCGCCGCCTGCTGA
TGGACCGCCTGCGCCATGCGCTCGCCACCCATGCGCGCAGCCGCCACCACGGCGCATTGCTGTTCATCGACCTCGACAAC
TTCAAGACGCTCAACGACACCCAGGGCCACCAGTACGGCGACATGCTGCTGCGCCAGGTGGCGGCGCGGCTGTCCGCCTG
CGTGCGTGAGGCCGACACCGTCGCCCGCCTCGGCGGCGACGAATTCGTCGTGATGCTTGAAGACCTCGACCGCGACAAGG
GCGCGGCAGCGCGCCAGGCCGAATCCGCGGGCGAGAAGATTCTTGCCGCGCTCAACGACGCCTACCAGCTCGACGGCCGC
GAGGCCCACAGCACGCCCAGCATCGGCATCACGCTGTTCGATGCCGCCGACGCCGAGATCGCCGAACTGCTCAAGCGCGC
CGACCTTGCGATGTACCAGGCCAAGGAAGCCGGCCGTAACACGTTGCGTTTCTTCGATCCGGTGATGCAGGCCACGGTGG
ATGCGCATTCCGCGCTCGAATCCGAGCTGCGCCGCAGCCTGCGCCAGGGCAACTTCGCGCTGCTGTTCCAGCCCCAGCTG
GATCGCGACGGGCGGATGACCGGCGCCGAGGCGCTGGTGCGCTGGCATCACCCGGAACAGGGGCTGGTGTCGCCCGCGGC
CTTCATTCCGCTGGCCGAACGCACCGGCCTGATCCTGCCGCTCGGGCGCTGGGTGCTGGAGAACGCCTGCGACAAGCTGG
CGGAGTGGGCGGCCGATCCGGAAACCGCGCATCTGACGCTGGCGGTCAATGTCAGCGTGCGCGAGTTCCGCCACCCGGGC
TTCTGCGACCAGGTCGAGCGTGTCCTGCAGCGCACCGGCGTGGCCCCGGGGCGGCTCAAGCTGGAACTGACCGAGAGCCT
GCTGCTGGAAGACGTGGAGGACGCGATCGAGCGCATGGACCGCCTGAAGCGGCTGGGCGTGGGCTTTTCGCTCGACGACT
TCGGCACCGGCTATTCCTCGCTCGCCTACCTAAAGCGCCTGCCGCTGGACCAGCTCAAGATCGACCGCTCCTTCGTGCGC
GACGTGATGACCGATCCCAACGACGCGATCATCGCCCGCACCATCATCGCGCTGGGCCAGAGCCTGGGGCTGGACGTGCT
GGCCGAGGGCGTGGAAACCGCGGAGCAGCACGACTTCCTGCTGCGCCACGGCTGCCAGAGTTTCCAGGGCTATCTGTTCG
GCCGTCCGCATGCCGAACTCGGCCACGCCGGGCGCGGCGCCACGCTGCACTGA

Upstream 100 bases:

>100_bases
CTGCGCTGGGTGTGGCTGATCCGCAGCATCGAGGCGGTGGCCGAATGAGCCCATCCCTGCAGTCGGCCGCGGCGGTGCGT
TGCCGCCGGGGAGTCGCCCG

Downstream 100 bases:

>100_bases
GGCGCGGCTACAGCCAGTTGGCTTTCTTGAAGCGCCAGTAGAGGAAACCGCAGGAACCGCCGATCAGCAGCAGCGCCAGC
GGATAGCCGTACTGCCAGTC

Product: GGDEF/EAL/PAS/PAC-domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MNAVRAWLARVHRNRFPLLALIVFVGSLAGVMLLSSSVGRIASALPLTSLYKERDFAALLTDVLELEAKLELAAAAPTPE
HLQRLAFGLDMAFLRQRDNAASYGDSRFDGVGEISARLDAVLEGIDASLQRGDTTAATLVRHVDEVAVLRSDLQRLNDAV
FQRSMQQASAQRAALDRLGSTSTAMIVLLGAFGLGLVAMLLRQQGSIKALEERDRELRRGEAVQRELRERLEKIADNVPG
VIYQFRCCPDGHIEFPYASRGLHTMFGITPEVAARDGSAVLAAIHPDDREVVAGAIRRSAETLQPWVCEYRIERAGGGYR
WMSVFATPQRERDGATLWHGHCHDVSSYKAAEDEIRHLAFYDPLTGLPNRRLLMDRLRHALATHARSRHHGALLFIDLDN
FKTLNDTQGHQYGDMLLRQVAARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKILAALNDAYQLDGR
EAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFDPVMQATVDAHSALESELRRSLRQGNFALLFQPQL
DRDGRMTGAEALVRWHHPEQGLVSPAAFIPLAERTGLILPLGRWVLENACDKLAEWAADPETAHLTLAVNVSVREFRHPG
FCDQVERVLQRTGVAPGRLKLELTESLLLEDVEDAIERMDRLKRLGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDRSFVR
DVMTDPNDAIIARTIIALGQSLGLDVLAEGVETAEQHDFLLRHGCQSFQGYLFGRPHAELGHAGRGATLH

Sequences:

>Translated_790_residues
MNAVRAWLARVHRNRFPLLALIVFVGSLAGVMLLSSSVGRIASALPLTSLYKERDFAALLTDVLELEAKLELAAAAPTPE
HLQRLAFGLDMAFLRQRDNAASYGDSRFDGVGEISARLDAVLEGIDASLQRGDTTAATLVRHVDEVAVLRSDLQRLNDAV
FQRSMQQASAQRAALDRLGSTSTAMIVLLGAFGLGLVAMLLRQQGSIKALEERDRELRRGEAVQRELRERLEKIADNVPG
VIYQFRCCPDGHIEFPYASRGLHTMFGITPEVAARDGSAVLAAIHPDDREVVAGAIRRSAETLQPWVCEYRIERAGGGYR
WMSVFATPQRERDGATLWHGHCHDVSSYKAAEDEIRHLAFYDPLTGLPNRRLLMDRLRHALATHARSRHHGALLFIDLDN
FKTLNDTQGHQYGDMLLRQVAARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKILAALNDAYQLDGR
EAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFDPVMQATVDAHSALESELRRSLRQGNFALLFQPQL
DRDGRMTGAEALVRWHHPEQGLVSPAAFIPLAERTGLILPLGRWVLENACDKLAEWAADPETAHLTLAVNVSVREFRHPG
FCDQVERVLQRTGVAPGRLKLELTESLLLEDVEDAIERMDRLKRLGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDRSFVR
DVMTDPNDAIIARTIIALGQSLGLDVLAEGVETAEQHDFLLRHGCQSFQGYLFGRPHAELGHAGRGATLH
>Mature_790_residues
MNAVRAWLARVHRNRFPLLALIVFVGSLAGVMLLSSSVGRIASALPLTSLYKERDFAALLTDVLELEAKLELAAAAPTPE
HLQRLAFGLDMAFLRQRDNAASYGDSRFDGVGEISARLDAVLEGIDASLQRGDTTAATLVRHVDEVAVLRSDLQRLNDAV
FQRSMQQASAQRAALDRLGSTSTAMIVLLGAFGLGLVAMLLRQQGSIKALEERDRELRRGEAVQRELRERLEKIADNVPG
VIYQFRCCPDGHIEFPYASRGLHTMFGITPEVAARDGSAVLAAIHPDDREVVAGAIRRSAETLQPWVCEYRIERAGGGYR
WMSVFATPQRERDGATLWHGHCHDVSSYKAAEDEIRHLAFYDPLTGLPNRRLLMDRLRHALATHARSRHHGALLFIDLDN
FKTLNDTQGHQYGDMLLRQVAARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKILAALNDAYQLDGR
EAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFDPVMQATVDAHSALESELRRSLRQGNFALLFQPQL
DRDGRMTGAEALVRWHHPEQGLVSPAAFIPLAERTGLILPLGRWVLENACDKLAEWAADPETAHLTLAVNVSVREFRHPG
FCDQVERVLQRTGVAPGRLKLELTESLLLEDVEDAIERMDRLKRLGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDRSFVR
DVMTDPNDAIIARTIIALGQSLGLDVLAEGVETAEQHDFLLRHGCQSFQGYLFGRPHAELGHAGRGATLH

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=433, Percent_Identity=37.4133949191686, Blast_Score=303, Evalue=2e-83,
Organism=Escherichia coli, GI87081921, Length=443, Percent_Identity=34.5372460496614, Blast_Score=239, Evalue=7e-64,
Organism=Escherichia coli, GI226510982, Length=421, Percent_Identity=32.3040380047506, Blast_Score=203, Evalue=4e-53,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=38.0753138075314, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=35.8024691358025, Blast_Score=150, Evalue=4e-37,
Organism=Escherichia coli, GI87081980, Length=240, Percent_Identity=37.5, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=35.7446808510638, Blast_Score=148, Evalue=2e-36,
Organism=Escherichia coli, GI1788849, Length=439, Percent_Identity=28.246013667426, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788502, Length=236, Percent_Identity=32.2033898305085, Blast_Score=129, Evalue=1e-30,
Organism=Escherichia coli, GI1787055, Length=281, Percent_Identity=30.2491103202847, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87082096, Length=430, Percent_Identity=25.5813953488372, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=32.4786324786325, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788381, Length=569, Percent_Identity=25.8347978910369, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=32.7777777777778, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081881, Length=206, Percent_Identity=34.9514563106796, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=36.969696969697, Blast_Score=93, Evalue=8e-20,
Organism=Escherichia coli, GI1787262, Length=181, Percent_Identity=32.0441988950276, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=35.5421686746988, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=36.9942196531792, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=35.2272727272727, Blast_Score=87, Evalue=6e-18,
Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=31.8435754189944, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1789650, Length=427, Percent_Identity=22.248243559719, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI87081974, Length=87, Percent_Identity=39.0804597701149, Blast_Score=70, Evalue=8e-13,
Organism=Escherichia coli, GI1787410, Length=128, Percent_Identity=32.03125, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=180, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87342; Mature: 87342

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVRAWLARVHRNRFPLLALIVFVGSLAGVMLLSSSVGRIASALPLTSLYKERDFAALL
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDVLELEAKLELAAAAPTPEHLQRLAFGLDMAFLRQRDNAASYGDSRFDGVGEISARLDA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
VLEGIDASLQRGDTTAATLVRHVDEVAVLRSDLQRLNDAVFQRSMQQASAQRAALDRLGS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSTAMIVLLGAFGLGLVAMLLRQQGSIKALEERDRELRRGEAVQRELRERLEKIADNVPG
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VIYQFRCCPDGHIEFPYASRGLHTMFGITPEVAARDGSAVLAAIHPDDREVVAGAIRRSA
EEEEEEECCCCCEECCCCCCCCHHHHCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH
ETLQPWVCEYRIERAGGGYRWMSVFATPQRERDGATLWHGHCHDVSSYKAAEDEIRHLAF
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHH
YDPLTGLPNRRLLMDRLRHALATHARSRHHGALLFIDLDNFKTLNDTQGHQYGDMLLRQV
HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
AARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKILAALNDAYQLDGR
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFDPVMQATVDAHSALE
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
SELRRSLRQGNFALLFQPQLDRDGRMTGAEALVRWHHPEQGLVSPAAFIPLAERTGLILP
HHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHCCHHHHCCCEEH
LGRWVLENACDKLAEWAADPETAHLTLAVNVSVREFRHPGFCDQVERVLQRTGVAPGRLK
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCEEE
LELTESLLLEDVEDAIERMDRLKRLGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDRSFVR
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCHHHHHHHHHHHH
DVMTDPNDAIIARTIIALGQSLGLDVLAEGVETAEQHDFLLRHGCQSFQGYLFGRPHAEL
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
GHAGRGATLH
CCCCCCCCCC
>Mature Secondary Structure
MNAVRAWLARVHRNRFPLLALIVFVGSLAGVMLLSSSVGRIASALPLTSLYKERDFAALL
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDVLELEAKLELAAAAPTPEHLQRLAFGLDMAFLRQRDNAASYGDSRFDGVGEISARLDA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
VLEGIDASLQRGDTTAATLVRHVDEVAVLRSDLQRLNDAVFQRSMQQASAQRAALDRLGS
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSTAMIVLLGAFGLGLVAMLLRQQGSIKALEERDRELRRGEAVQRELRERLEKIADNVPG
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VIYQFRCCPDGHIEFPYASRGLHTMFGITPEVAARDGSAVLAAIHPDDREVVAGAIRRSA
EEEEEEECCCCCEECCCCCCCCHHHHCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH
ETLQPWVCEYRIERAGGGYRWMSVFATPQRERDGATLWHGHCHDVSSYKAAEDEIRHLAF
HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHH
YDPLTGLPNRRLLMDRLRHALATHARSRHHGALLFIDLDNFKTLNDTQGHQYGDMLLRQV
HCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
AARLSACVREADTVARLGGDEFVVMLEDLDRDKGAAARQAESAGEKILAALNDAYQLDGR
HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
EAHSTPSIGITLFDAADAEIAELLKRADLAMYQAKEAGRNTLRFFDPVMQATVDAHSALE
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
SELRRSLRQGNFALLFQPQLDRDGRMTGAEALVRWHHPEQGLVSPAAFIPLAERTGLILP
HHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHCCHHHHCCCEEH
LGRWVLENACDKLAEWAADPETAHLTLAVNVSVREFRHPGFCDQVERVLQRTGVAPGRLK
HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCCCEEE
LELTESLLLEDVEDAIERMDRLKRLGVGFSLDDFGTGYSSLAYLKRLPLDQLKIDRSFVR
EHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHCCHHHHHHHHHHHH
DVMTDPNDAIIARTIIALGQSLGLDVLAEGVETAEQHDFLLRHGCQSFQGYLFGRPHAEL
HHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
GHAGRGATLH
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]