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The map label for this gene is cph1 [H]

Identifier: 119897953

GI number: 119897953

Start: 1824697

End: 1826376

Strand: Reverse

Name: cph1 [H]

Synonym: azo1662

Alternate gene names: 119897953

Gene position: 1826376-1824697 (Counterclockwise)

Preceding gene: 119897955

Following gene: 119897952

Centisome position: 41.74

GC content: 67.74

Gene sequence:

>1680_bases
ATGGCCCGCCTTCACGGGCTCGTTCCGCTGCTCGGCGCCAGCATGCCGGCGCTTGCGGCGGAAGCAGATGCGGCCGGCGG
CGGTCTGACGGCGTTTGCGATCGGCCTGGTGGCGGTCGCGCTCGCCGGCTTCGGTGCCGGCGCCTGGTGGCGCCGCCCCC
GCGTCGAGGCAGCCGGCGAGGCGGTTCTGCCGGCCCCGGATGCGCGCGGCTTGCTCGAACTCATCGCGATGGCCTCGGAC
TGGGTATGGACCACCGACGCCGACCATCGCTACACCCGGATCGGCGAAGGACTGCGCAACCGCCCGGGGCTCGACCCCCG
CGCCCTGCTCGGCCGCCGCCCGTGGGAGCAGGCCTGGGATGAATGCGAGCCGGTTGACTGGCTGCGCTACCGCACCCAGG
TCGAACAACGCGACGCGGTCACGCTGCAGATCACCTGCAAGGGCAGCGACGGCGCGCTGCACTACCTCGAACTCATCGGC
CGGCCACTGGTGCGCAACGGCGAATTCGCCGGCTACCAGGGCATCGGCCGCGACCTGACCGAGCAGGTGGCCACCGAACG
TGCGCTGCAGGAAAGCCAGCAGCGCTATTTCGAAGTGGTGGAAGCGGTCAACGAGGTCATTTTCCGCACCGACACCCAAG
GGCGGCTCAGCTTCATCAACGGCGTGTGGCGCAACATCACCGGCTACCGGGTGGAACAGAGCCTGGGAAAGCCGCTGGTC
GATTTCTTTCACCCGGACGACCGCGGCGGCGCCAGCGAACAACTGCTGGCGGTGGCCAGCGGACGACTGCCCGAATGCCA
TTTCGAGCTGCGCCTGCGCACCCGCGAAGGGGAAATCCGCTGGATCGAGGCCGCCTGCCGCCCGATCACCGACGCGGCCG
GGAGCCGGCTCGGTATCGCCGGCACGCTGGACGACATCTCGTCGCGCAAGGTGGCCGAACTCACGCTGAAGAACATCAAC
CAGGAACTCGAAGCACGGGTGCGCATGCGCACCTCCGAACTGGAAGCCTCCAACCGCGAACTCGAGGCCTTCTCGTATTC
GGTCTCGCACGACCTGCGCGCGCCGCTGCGCGCGATCGACGGCTTTGCCCGCATCCTCGAAGAAGAGCTGGAAGAAAAGC
TGGATGAAACGGCGCGCAGTCACCTCGACCGTATCCGCAAGGCAACGCAGCGGATGGCGCATCTGATCGATGCGCTGATC
GAACTCGCCCGCCTCACCCGCCAGTCGCTGCACAAGGAAACCTTCGACATCTCCGAACTCGCGCTGCAGGTGGTCGAAGA
ACTGCGCGCCGAGGAGCCTGAGCGCGAAGTCGAAGTGGAAATCACCCGCGGCCTCATCGTCACCGCCGACCGCACGCTGG
TGCGCGTGCTGATCGAAAACCTGCTGCGCAACGCGTGGAAGTTCTCCTCGCGCCAGGCCGTCGCGCGAATCGCCTTCCGT
GCCGAGCGCGAACGCGAACGCCGCGTGTTCTGCGTGGCCGACAACGGCGCGGGCTTCGACATGGCCTTCGCGGCCAACCT
CTTCCGCCCCTTCCACCGCCTGCACAACGCCACTGAGTTCTCCGGCACAGGCATCGGGCTTGCAACAGTGCAGCGCATCA
TCCAGCGCCACGGCGGCGTCATCTGGGCCCAGTCCAAACCCGGTGAAGGCGCGCGCTTCTACTTCACGCTCGGGAGCTGA

Upstream 100 bases:

>100_bases
AACCTCGCGCTTGCTAATCCAATCGAGGTAATCCGAAAACGGGAGTCCCGTGAGTCGCGCACAACCGAAACCGTTCTCGT
CCCCCATAAGGCATGGGTCG

Downstream 100 bases:

>100_bases
ACCCCCATGCAACGCCAGCCCTTCAACTAATCCGCCAACACGCGCCGCCCCCGTGAGAAGTAACATGGAGGCGATTTGTG
CACTGCAGTACAATACGGGC

Product: putative two-component system sensor protein

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MARLHGLVPLLGASMPALAAEADAAGGGLTAFAIGLVAVALAGFGAGAWWRRPRVEAAGEAVLPAPDARGLLELIAMASD
WVWTTDADHRYTRIGEGLRNRPGLDPRALLGRRPWEQAWDECEPVDWLRYRTQVEQRDAVTLQITCKGSDGALHYLELIG
RPLVRNGEFAGYQGIGRDLTEQVATERALQESQQRYFEVVEAVNEVIFRTDTQGRLSFINGVWRNITGYRVEQSLGKPLV
DFFHPDDRGGASEQLLAVASGRLPECHFELRLRTREGEIRWIEAACRPITDAAGSRLGIAGTLDDISSRKVAELTLKNIN
QELEARVRMRTSELEASNRELEAFSYSVSHDLRAPLRAIDGFARILEEELEEKLDETARSHLDRIRKATQRMAHLIDALI
ELARLTRQSLHKETFDISELALQVVEELRAEEPEREVEVEITRGLIVTADRTLVRVLIENLLRNAWKFSSRQAVARIAFR
AERERERRVFCVADNGAGFDMAFAANLFRPFHRLHNATEFSGTGIGLATVQRIIQRHGGVIWAQSKPGEGARFYFTLGS

Sequences:

>Translated_559_residues
MARLHGLVPLLGASMPALAAEADAAGGGLTAFAIGLVAVALAGFGAGAWWRRPRVEAAGEAVLPAPDARGLLELIAMASD
WVWTTDADHRYTRIGEGLRNRPGLDPRALLGRRPWEQAWDECEPVDWLRYRTQVEQRDAVTLQITCKGSDGALHYLELIG
RPLVRNGEFAGYQGIGRDLTEQVATERALQESQQRYFEVVEAVNEVIFRTDTQGRLSFINGVWRNITGYRVEQSLGKPLV
DFFHPDDRGGASEQLLAVASGRLPECHFELRLRTREGEIRWIEAACRPITDAAGSRLGIAGTLDDISSRKVAELTLKNIN
QELEARVRMRTSELEASNRELEAFSYSVSHDLRAPLRAIDGFARILEEELEEKLDETARSHLDRIRKATQRMAHLIDALI
ELARLTRQSLHKETFDISELALQVVEELRAEEPEREVEVEITRGLIVTADRTLVRVLIENLLRNAWKFSSRQAVARIAFR
AERERERRVFCVADNGAGFDMAFAANLFRPFHRLHNATEFSGTGIGLATVQRIIQRHGGVIWAQSKPGEGARFYFTLGS
>Mature_558_residues
ARLHGLVPLLGASMPALAAEADAAGGGLTAFAIGLVAVALAGFGAGAWWRRPRVEAAGEAVLPAPDARGLLELIAMASDW
VWTTDADHRYTRIGEGLRNRPGLDPRALLGRRPWEQAWDECEPVDWLRYRTQVEQRDAVTLQITCKGSDGALHYLELIGR
PLVRNGEFAGYQGIGRDLTEQVATERALQESQQRYFEVVEAVNEVIFRTDTQGRLSFINGVWRNITGYRVEQSLGKPLVD
FFHPDDRGGASEQLLAVASGRLPECHFELRLRTREGEIRWIEAACRPITDAAGSRLGIAGTLDDISSRKVAELTLKNINQ
ELEARVRMRTSELEASNRELEAFSYSVSHDLRAPLRAIDGFARILEEELEEKLDETARSHLDRIRKATQRMAHLIDALIE
LARLTRQSLHKETFDISELALQVVEELRAEEPEREVEVEITRGLIVTADRTLVRVLIENLLRNAWKFSSRQAVARIAFRA
ERERERRVFCVADNGAGFDMAFAANLFRPFHRLHNATEFSGTGIGLATVQRIIQRHGGVIWAQSKPGEGARFYFTLGS

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=384, Percent_Identity=26.5625, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI48994928, Length=384, Percent_Identity=24.7395833333333, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1786600, Length=380, Percent_Identity=27.1052631578947, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786912, Length=229, Percent_Identity=31.8777292576419, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1790861, Length=395, Percent_Identity=25.3164556962025, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1790346, Length=247, Percent_Identity=27.5303643724696, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789808, Length=197, Percent_Identity=32.48730964467, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788381, Length=313, Percent_Identity=24.2811501597444, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789149, Length=225, Percent_Identity=25.3333333333333, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081816, Length=293, Percent_Identity=26.2798634812287, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI145693157, Length=263, Percent_Identity=25.0950570342205, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790436, Length=213, Percent_Identity=25.3521126760563, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790551, Length=212, Percent_Identity=25.4716981132075, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 62572; Mature: 62441

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLHGLVPLLGASMPALAAEADAAGGGLTAFAIGLVAVALAGFGAGAWWRRPRVEAAGE
CCCHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AVLPAPDARGLLELIAMASDWVWTTDADHRYTRIGEGLRNRPGLDPRALLGRRPWEQAWD
CCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHH
ECEPVDWLRYRTQVEQRDAVTLQITCKGSDGALHYLELIGRPLVRNGEFAGYQGIGRDLT
CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
EQVATERALQESQQRYFEVVEAVNEVIFRTDTQGRLSFINGVWRNITGYRVEQSLGKPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHH
DFFHPDDRGGASEQLLAVASGRLPECHFELRLRTREGEIRWIEAACRPITDAAGSRLGIA
HHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEHHHHHCHHHHHCCCCEECE
GTLDDISSRKVAELTLKNINQELEARVRMRTSELEASNRELEAFSYSVSHDLRAPLRAID
ECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEHHHHHHHHHHHHHH
GFARILEEELEEKLDETARSHLDRIRKATQRMAHLIDALIELARLTRQSLHKETFDISEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ALQVVEELRAEEPEREVEVEITRGLIVTADRTLVRVLIENLLRNAWKFSSRQAVARIAFR
HHHHHHHHHCCCCCCCEEEEEECCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AERERERRVFCVADNGAGFDMAFAANLFRPFHRLHNATEFSGTGIGLATVQRIIQRHGGV
HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCE
IWAQSKPGEGARFYFTLGS
EEECCCCCCCCEEEEEECC
>Mature Secondary Structure 
ARLHGLVPLLGASMPALAAEADAAGGGLTAFAIGLVAVALAGFGAGAWWRRPRVEAAGE
CCHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
AVLPAPDARGLLELIAMASDWVWTTDADHRYTRIGEGLRNRPGLDPRALLGRRPWEQAWD
CCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHH
ECEPVDWLRYRTQVEQRDAVTLQITCKGSDGALHYLELIGRPLVRNGEFAGYQGIGRDLT
CCCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
EQVATERALQESQQRYFEVVEAVNEVIFRTDTQGRLSFINGVWRNITGYRVEQSLGKPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCHHH
DFFHPDDRGGASEQLLAVASGRLPECHFELRLRTREGEIRWIEAACRPITDAAGSRLGIA
HHCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCEEEHHHHHCHHHHHCCCCEECE
GTLDDISSRKVAELTLKNINQELEARVRMRTSELEASNRELEAFSYSVSHDLRAPLRAID
ECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEHHHHHHHHHHHHHH
GFARILEEELEEKLDETARSHLDRIRKATQRMAHLIDALIELARLTRQSLHKETFDISEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
ALQVVEELRAEEPEREVEVEITRGLIVTADRTLVRVLIENLLRNAWKFSSRQAVARIAFR
HHHHHHHHHCCCCCCCEEEEEECCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AERERERRVFCVADNGAGFDMAFAANLFRPFHRLHNATEFSGTGIGLATVQRIIQRHGGV
HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCE
IWAQSKPGEGARFYFTLGS
EEECCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]