| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is yhcR [H]
Identifier: 119897774
GI number: 119897774
Start: 1617116
End: 1619113
Strand: Reverse
Name: yhcR [H]
Synonym: azo1483
Alternate gene names: 119897774
Gene position: 1619113-1617116 (Counterclockwise)
Preceding gene: 119897775
Following gene: 119897773
Centisome position: 37.0
GC content: 69.02
Gene sequence:
>1998_bases ATGCGTTTCCCGCTCAAGACCCTCGCGCTGCTGGTCGGCTTCGGCTGCGCGCAACCGCTGCTCGCCGCGCAATGCGCCGG CACGGTCGGCTTCGGCGAAGCCAACGGCCGTGTGCTCACCCAGGTCGCCAACCGCGCCGTCGGCGCGGCCTGCTTCAACG ATCTGATCATCGACACCGACGCCGAAGGCGCCAACTACGGCAGCCACGGCGAATTCGTCGCCGCCTTCGGCGCGCTTGCC CGCGACTGGCGCGACCGGGGGCTGATCAACGGCCGCGAATACGGCGAACTCGTCAGCGCCGCGGCGCGCTCCAACGTCGG CAAGACGCTGAAGCTGCGCGTGATCGCGTTCAACGACTTCCACGGCAACATCGACGGCAGCACGCTCACCCAGTCGAGCG CGGCGGACGGCTTTTCCGGGGTGCGCGCCGGCGGCGTCGACTACCTTGCCGGGCTGGTCAAGCAACTGCGCGACGGCGCG CCCAACAGCGTGGTGGTGTCGGCCGGCGACCTGATCGGCGCCAGCCCGCTCAACTCCGCGCTGTTCCACGACGAGCCGAC GATCGAGACCATGAACCGCCTCGGCCTCGACTTCAACGCGGTCGGCAACCACGAGTTCGACGAAGGCAAGGACGAGCTGC TGCGCATGAAGCGCGGCGGCTGCCACCCCACCGACGCCAACTCCTGCCAGGGCAACGCGGTCGGCACGCCCTACCCGTTC GAGGGCGCGGCGTTCGACTTCCTCGCTGCCAACGTGGTCGATAGCGCCACCGGCGACACCGTCTTCCCCGCCTACGGCAT CAAGGAATACAAGGGCATCCGCGTCGCCTTCATCGGCATGACGCTGAAGGGCACGCCCTCCATCGTCACCCCGGGCGGCA TCGTCGGCCTGCGCTTCGGCGATGAAGCCGACACGGTGAACGCGCTGATCGGCAAGCTGAAGGACGAAGGCGTCAACGCG GTGGTGGTGCTGGTGCATGAAGGCGGCTACGCCCCCGGCAGCATCAACGGCTGCAGCGGCATTTCCGGCCCGATCACCGA CATCGTCAAACGCCTCGACGACGCGGTGGACCTGGTGGTGTCCGGCCACACGCATGCCGCCTACAACTGCACGCTGCCCA ACCGCGCCGGGCGCGCGATCCCGGTCACCAGCGCGGGCAACTACGGCCGCCTGGTCACCCGCATCGACCTGGTACTCGAC ACCAAGCGCCGTGACGTCATCGCCGCCCGCGCGCAGAACCTGGTGGTCGATCGCAACAATGTGCTCGGCGCCATCGAGCC GATCGTGCCGGACGCGGCCATCGCCGGCATCGTCGCCAACTACAACGCGCTCACCGGCCCGATCGCCAACCGCGTCATCG GCAACATCACCGCCACCCTCAGCCGCAGCATCAACGCCGCGGGTGAATCGGTGCTCGGCGACCTGATCGCCGACGGCCAG TTGCTCGCCACCGCGCCGGCGCAAAAGGGCGGCGCCGTGGTCGCCTTCATGAACCCGGGCGGCATCCGCGCCGACTTCAC CTATCCCGGCAGCCCGGCCGGCGAAGGCGACGGCCAGGTGACCTACGGCGAAGCGTTTACCGTGCAGCCCTTCGGCAACA GCCTGGTGGTGAAGACACTGAGCGGCCAGCAGCTCTACGACCTGCTCGAACAGCAGTGGGCGGTCGGCCAGCCGGCCAGC GGCCGCATCCTGCAGGTGTCCGACGGCTTCCACTACCGTCACACCTTCAGCGCCAGCGTCAGCCCGCTCGGCGGGCGCTA CGTCTGCGACGGCTCGGTGACGCTGAACGGCGTGGCGGTCGACAAGGCGGCCCGCTACCGCGTGACGATGAACTCCTTCC TCGCCACCGGCGGCGACAACTTCAGCGTCTTCAGCCTCGGCACCGAGCCGCTGGGCGGTGATGTGGACCTGGACGCGCTG ACCGACTGGTTCGCGCTGAAGTCCCCCGCCGCACCGACCGCGGTGGACCGCATCGTCAAGGTCGCGTCCTGCAACTAA
Upstream 100 bases:
>100_bases CACGGTGACGGTGCCGCACTCGGCGGCGCAGTAAGCCGGGCCCCCTACCCGCCGCCCGTTCGCGGCGGCGGGCTTCCCGC TGTTCCCCATGGAGAGAACC
Downstream 100 bases:
>100_bases GGCGTTGATTTCCCCGGCGGCGCCCTGCCGCCGCCGGGCCTTCCGCACCCGGGGCCCGCCCCGGCTACCCGCGCGGCGGG CCGACGCGCTACCATGGCGC
Product: 5'-nucleotidase
Products: ribonucleoside; phosphate
Alternate protein names: NA
Number of amino acids: Translated: 665; Mature: 665
Protein sequence:
>665_residues MRFPLKTLALLVGFGCAQPLLAAQCAGTVGFGEANGRVLTQVANRAVGAACFNDLIIDTDAEGANYGSHGEFVAAFGALA RDWRDRGLINGREYGELVSAAARSNVGKTLKLRVIAFNDFHGNIDGSTLTQSSAADGFSGVRAGGVDYLAGLVKQLRDGA PNSVVVSAGDLIGASPLNSALFHDEPTIETMNRLGLDFNAVGNHEFDEGKDELLRMKRGGCHPTDANSCQGNAVGTPYPF EGAAFDFLAANVVDSATGDTVFPAYGIKEYKGIRVAFIGMTLKGTPSIVTPGGIVGLRFGDEADTVNALIGKLKDEGVNA VVVLVHEGGYAPGSINGCSGISGPITDIVKRLDDAVDLVVSGHTHAAYNCTLPNRAGRAIPVTSAGNYGRLVTRIDLVLD TKRRDVIAARAQNLVVDRNNVLGAIEPIVPDAAIAGIVANYNALTGPIANRVIGNITATLSRSINAAGESVLGDLIADGQ LLATAPAQKGGAVVAFMNPGGIRADFTYPGSPAGEGDGQVTYGEAFTVQPFGNSLVVKTLSGQQLYDLLEQQWAVGQPAS GRILQVSDGFHYRHTFSASVSPLGGRYVCDGSVTLNGVAVDKAARYRVTMNSFLATGGDNFSVFSLGTEPLGGDVDLDAL TDWFALKSPAAPTAVDRIVKVASCN
Sequences:
>Translated_665_residues MRFPLKTLALLVGFGCAQPLLAAQCAGTVGFGEANGRVLTQVANRAVGAACFNDLIIDTDAEGANYGSHGEFVAAFGALA RDWRDRGLINGREYGELVSAAARSNVGKTLKLRVIAFNDFHGNIDGSTLTQSSAADGFSGVRAGGVDYLAGLVKQLRDGA PNSVVVSAGDLIGASPLNSALFHDEPTIETMNRLGLDFNAVGNHEFDEGKDELLRMKRGGCHPTDANSCQGNAVGTPYPF EGAAFDFLAANVVDSATGDTVFPAYGIKEYKGIRVAFIGMTLKGTPSIVTPGGIVGLRFGDEADTVNALIGKLKDEGVNA VVVLVHEGGYAPGSINGCSGISGPITDIVKRLDDAVDLVVSGHTHAAYNCTLPNRAGRAIPVTSAGNYGRLVTRIDLVLD TKRRDVIAARAQNLVVDRNNVLGAIEPIVPDAAIAGIVANYNALTGPIANRVIGNITATLSRSINAAGESVLGDLIADGQ LLATAPAQKGGAVVAFMNPGGIRADFTYPGSPAGEGDGQVTYGEAFTVQPFGNSLVVKTLSGQQLYDLLEQQWAVGQPAS GRILQVSDGFHYRHTFSASVSPLGGRYVCDGSVTLNGVAVDKAARYRVTMNSFLATGGDNFSVFSLGTEPLGGDVDLDAL TDWFALKSPAAPTAVDRIVKVASCN >Mature_665_residues MRFPLKTLALLVGFGCAQPLLAAQCAGTVGFGEANGRVLTQVANRAVGAACFNDLIIDTDAEGANYGSHGEFVAAFGALA RDWRDRGLINGREYGELVSAAARSNVGKTLKLRVIAFNDFHGNIDGSTLTQSSAADGFSGVRAGGVDYLAGLVKQLRDGA PNSVVVSAGDLIGASPLNSALFHDEPTIETMNRLGLDFNAVGNHEFDEGKDELLRMKRGGCHPTDANSCQGNAVGTPYPF EGAAFDFLAANVVDSATGDTVFPAYGIKEYKGIRVAFIGMTLKGTPSIVTPGGIVGLRFGDEADTVNALIGKLKDEGVNA VVVLVHEGGYAPGSINGCSGISGPITDIVKRLDDAVDLVVSGHTHAAYNCTLPNRAGRAIPVTSAGNYGRLVTRIDLVLD TKRRDVIAARAQNLVVDRNNVLGAIEPIVPDAAIAGIVANYNALTGPIANRVIGNITATLSRSINAAGESVLGDLIADGQ LLATAPAQKGGAVVAFMNPGGIRADFTYPGSPAGEGDGQVTYGEAFTVQPFGNSLVVKTLSGQQLYDLLEQQWAVGQPAS GRILQVSDGFHYRHTFSASVSPLGGRYVCDGSVTLNGVAVDKAARYRVTMNSFLATGGDNFSVFSLGTEPLGGDVDLDAL TDWFALKSPAAPTAVDRIVKVASCN
Specific function: Sugar-nonspecific endonuclease that yields nucleotide 3'-monophosphate products. No 5'-nucleotidase activity was detected, using 5'-AMP as the substrate, in the presence of diverse divalent metals and with various pH values [H]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TNase-like domain [H]
Homologues:
Organism=Escherichia coli, GI1786687, Length=534, Percent_Identity=23.9700374531835, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1790658, Length=577, Percent_Identity=23.7435008665511, Blast_Score=89, Evalue=1e-18, Organism=Drosophila melanogaster, GI221329836, Length=584, Percent_Identity=24.486301369863, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI24641187, Length=581, Percent_Identity=23.5800344234079, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI19922444, Length=591, Percent_Identity=23.3502538071066, Blast_Score=99, Evalue=7e-21, Organism=Drosophila melanogaster, GI19922446, Length=592, Percent_Identity=22.2972972972973, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI24654424, Length=592, Percent_Identity=22.2972972972973, Blast_Score=96, Evalue=6e-20, Organism=Drosophila melanogaster, GI28573524, Length=542, Percent_Identity=23.4317343173432, Blast_Score=81, Evalue=2e-15,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR019948 - InterPro: IPR019931 - InterPro: IPR004843 - InterPro: IPR016027 - InterPro: IPR004365 - InterPro: IPR016071 - InterPro: IPR006021 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00746 Gram_pos_anchor; PF00149 Metallophos; PF00565 SNase; PF01336 tRNA_anti [H]
EC number: 3.1.3.5
Molecular weight: Translated: 69007; Mature: 69007
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFPLKTLALLVGFGCAQPLLAAQCAGTVGFGEANGRVLTQVANRAVGAACFNDLIIDTD CCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECC AEGANYGSHGEFVAAFGALARDWRDRGLINGREYGELVSAAARSNVGKTLKLRVIAFNDF CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECC HGNIDGSTLTQSSAADGFSGVRAGGVDYLAGLVKQLRDGAPNSVVVSAGDLIGASPLNSA CCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH LFHDEPTIETMNRLGLDFNAVGNHEFDEGKDELLRMKRGGCHPTDANSCQGNAVGTPYPF HCCCCCCHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC EGAAFDFLAANVVDSATGDTVFPAYGIKEYKGIRVAFIGMTLKGTPSIVTPGGIVGLRFG CCCHHHHHHHHHHHCCCCCEECCCCCCHHHCCEEEEEEEEEECCCCCEECCCCEEEEEEC DEADTVNALIGKLKDEGVNAVVVLVHEGGYAPGSINGCSGISGPITDIVKRLDDAVDLVV CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEE SGHTHAAYNCTLPNRAGRAIPVTSAGNYGRLVTRIDLVLDTKRRDVIAARAQNLVVDRNN ECCCCEEEEECCCCCCCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHEEEECCC VLGAIEPIVPDAAIAGIVANYNALTGPIANRVIGNITATLSRSINAAGESVLGDLIADGQ CCEECCCCCCCHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE LLATAPAQKGGAVVAFMNPGGIRADFTYPGSPAGEGDGQVTYGEAFTVQPFGNSLVVKTL EEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCEEEEEECCCEEEEEEC SGQQLYDLLEQQWAVGQPASGRILQVSDGFHYRHTFSASVSPLGGRYVCDGSVTLNGVAV CCHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCEEEECCCEEEEEEEE DKAARYRVTMNSFLATGGDNFSVFSLGTEPLGGDVDLDALTDWFALKSPAAPTAVDRIVK CCCCEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH VASCN HHCCC >Mature Secondary Structure MRFPLKTLALLVGFGCAQPLLAAQCAGTVGFGEANGRVLTQVANRAVGAACFNDLIIDTD CCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEECC AEGANYGSHGEFVAAFGALARDWRDRGLINGREYGELVSAAARSNVGKTLKLRVIAFNDF CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECC HGNIDGSTLTQSSAADGFSGVRAGGVDYLAGLVKQLRDGAPNSVVVSAGDLIGASPLNSA CCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHH LFHDEPTIETMNRLGLDFNAVGNHEFDEGKDELLRMKRGGCHPTDANSCQGNAVGTPYPF HCCCCCCHHHHHHCCCCEECCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC EGAAFDFLAANVVDSATGDTVFPAYGIKEYKGIRVAFIGMTLKGTPSIVTPGGIVGLRFG CCCHHHHHHHHHHHCCCCCEECCCCCCHHHCCEEEEEEEEEECCCCCEECCCCEEEEEEC DEADTVNALIGKLKDEGVNAVVVLVHEGGYAPGSINGCSGISGPITDIVKRLDDAVDLVV CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEE SGHTHAAYNCTLPNRAGRAIPVTSAGNYGRLVTRIDLVLDTKRRDVIAARAQNLVVDRNN ECCCCEEEEECCCCCCCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHEEEECCC VLGAIEPIVPDAAIAGIVANYNALTGPIANRVIGNITATLSRSINAAGESVLGDLIADGQ CCEECCCCCCCHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE LLATAPAQKGGAVVAFMNPGGIRADFTYPGSPAGEGDGQVTYGEAFTVQPFGNSLVVKTL EEEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCEEEECCEEEEEECCCEEEEEEC SGQQLYDLLEQQWAVGQPASGRILQVSDGFHYRHTFSASVSPLGGRYVCDGSVTLNGVAV CCHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCEEEECCCEEEEEEEE DKAARYRVTMNSFLATGGDNFSVFSLGTEPLGGDVDLDALTDWFALKSPAAPTAVDRIVK CCCCEEEEEEHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH VASCN HHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 5'-ribonucleotide; H2O
Specific reaction: A 5'-ribonucleotide + H2O = a ribonucleoside + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]