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The map label for this gene is rnfC2 [H]

Identifier: 119897730

GI number: 119897730

Start: 1568524

End: 1570182

Strand: Reverse

Name: rnfC2 [H]

Synonym: azo1439

Alternate gene names: 119897730

Gene position: 1570182-1568524 (Counterclockwise)

Preceding gene: 119897731

Following gene: 119897729

Centisome position: 35.88

GC content: 71.31

Gene sequence:

>1659_bases
ATGATCGGACGCCTGTTCAGTTTTCGCGGCGGCATCAAGCCCGCCGCCCACAAGGAAGAATCCGCCGGCGCCGCCATCGT
CGCCGCGCCGCTGCCGGCCCAGCTGGTGGTGCCGCTGCGGCAGAGCATTCGCGCCACCGCGCGCTGCCTGGTCGCTCCCG
GCCAGCGGGTGCTGAAGGGCGAGCGCATCGGCGCGGCCGACGGTCCGCTCGGCACCGCGGTGCATGCCCCCACCTCCGGC
ACCGTGGTCGAGATCGCACCGCGGCCGATGGCCCACCCGTCGGGGCTGGATACGCGCTGCGTCATCATCGCCCCCGACGG
CGAGGACCGCTGGATCGAACACCAGCCCTTCGACCACCGCGCCGCCGGACGCGACGCCACCCTCGCCCACCTGCGCGACT
GCGGCATTGTCGGACTGGGCGGGGCGACCTTCCCCAGCCACGTCAAGCTGGGCCGCGGCAAGGGCGTGGAGACCCTGATC
CTGAACGGCGCCGAGTGCGAACCGTGGATCACCTGCGACGACCGCCTGATGCGCGAACGCGCGGCCGACATCCTCGCCGG
CGCCACCGTGCTGCGCGAACTGATCGGCGCCCAGCGCCTCATCGTCGGCATCGAGGACAACAAGCCGGAAGCCATCGCCG
CGATGCGCGCCGCCGCCGGCAGCGACGCCGAGGTGGTGGCGGTTCCGGCGCTGTACCCTGCGGGCGGCGAAAAACAGCTC
ATCCGCGTGCTCACCGGCATCGAGATCCCCTACGGCAAGCTCGGCGGCGACTTCGGCGTCCAGTGCTTCAACGTCGGCAC
CGCGCATGCGGTGTACCGTGCCATCGCGCACGGCGAACCGCTGGTGTCGCGCGTGGTCACCCTGACGGGCAGCGTCGCGC
GCCCCGGCAACTACGAAGTGGCGATCGGCACCCCGATCCAGGATCTGCTCCCGCTGGCGCAGCCCGCCGGCGATACCGAC
CGCTACCTGATGGGCGGCCCGATGATGGGGTTCGCGCTGCCGCGCCTCGACGTTCCGGTGGTCAAGGCCACCAACTGCGT
GATTGCCGCGTCCCCCGCCCTGTTCCCGCCGCCGCCGCCGGAACAGCCCTGCATCCGCTGCGGCGAATGCGCGCGCGCCT
GCCCGGCCGAGTTGCAACCCTTCGAGCTGTACTGGTTCGGCCGCGCACGCAATTTCGGCAAGGCGCAGGAATACCACCTG
TTCGACTGCATCGAGTGCGGCTGCTGCGCCTACGTGTGCCCGGCCCACATTCCGCTGGTCGATTACTTCCGCTTCTCCAA
GGGCGAGATCTGGGCGCGTGAGCGCGACAAGGACGCGGCCGACGCGGCGCGCGAACGCTTCGAGTTCCGCAACTTCCGCC
AGGAACGCGAGAAGGCCGAGAAAGCCGCCCGTCTGGCCGCCAAGGCCGCCGAAACCCGCAGCAAGCTGGCCGAGGAAGCC
CCCGCTGCGGGAGATGCCCCTGCCGCGGACGACGCCAAGAAGGCCCTGATCGCCGCCGCGCTGGCGCGCGCCAAGGCGCA
GAAGGACACGGTCGAAGTGCGCAACACCGACAACCTCAGCCCCGCGGTGCAGGCGGAAATCGCCGCGGTGGAAGCGCGCC
GCAAAGCGGCGCTCGAAACAGGCGCCGCCCCCGTCGCCACGCCGGACAACGAGTCATGA

Upstream 100 bases:

>100_bases
TCGCGCCCTGCCCGGTCGACTGTATCTACATGGAGCCGGTACGCGAAACCGTGCAGACCTGGCGCTGGAAATACCCGGTC
GTCGAGATCAGGAAGGCAGC

Downstream 100 bases:

>100_bases
TGCATTCTCCCTACATCCGCCGGCCGGCCAGCGTCCAGCGCGTGATGCTCACCGTGCTTGCGGCCCTGCTGCCGGGCATC
GCGCTGTACGTGTGGCAGAT

Product: electron transport complex protein RnfC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MIGRLFSFRGGIKPAAHKEESAGAAIVAAPLPAQLVVPLRQSIRATARCLVAPGQRVLKGERIGAADGPLGTAVHAPTSG
TVVEIAPRPMAHPSGLDTRCVIIAPDGEDRWIEHQPFDHRAAGRDATLAHLRDCGIVGLGGATFPSHVKLGRGKGVETLI
LNGAECEPWITCDDRLMRERAADILAGATVLRELIGAQRLIVGIEDNKPEAIAAMRAAAGSDAEVVAVPALYPAGGEKQL
IRVLTGIEIPYGKLGGDFGVQCFNVGTAHAVYRAIAHGEPLVSRVVTLTGSVARPGNYEVAIGTPIQDLLPLAQPAGDTD
RYLMGGPMMGFALPRLDVPVVKATNCVIAASPALFPPPPPEQPCIRCGECARACPAELQPFELYWFGRARNFGKAQEYHL
FDCIECGCCAYVCPAHIPLVDYFRFSKGEIWARERDKDAADAARERFEFRNFRQEREKAEKAARLAAKAAETRSKLAEEA
PAAGDAPAADDAKKALIAAALARAKAQKDTVEVRNTDNLSPAVQAEIAAVEARRKAALETGAAPVATPDNES

Sequences:

>Translated_552_residues
MIGRLFSFRGGIKPAAHKEESAGAAIVAAPLPAQLVVPLRQSIRATARCLVAPGQRVLKGERIGAADGPLGTAVHAPTSG
TVVEIAPRPMAHPSGLDTRCVIIAPDGEDRWIEHQPFDHRAAGRDATLAHLRDCGIVGLGGATFPSHVKLGRGKGVETLI
LNGAECEPWITCDDRLMRERAADILAGATVLRELIGAQRLIVGIEDNKPEAIAAMRAAAGSDAEVVAVPALYPAGGEKQL
IRVLTGIEIPYGKLGGDFGVQCFNVGTAHAVYRAIAHGEPLVSRVVTLTGSVARPGNYEVAIGTPIQDLLPLAQPAGDTD
RYLMGGPMMGFALPRLDVPVVKATNCVIAASPALFPPPPPEQPCIRCGECARACPAELQPFELYWFGRARNFGKAQEYHL
FDCIECGCCAYVCPAHIPLVDYFRFSKGEIWARERDKDAADAARERFEFRNFRQEREKAEKAARLAAKAAETRSKLAEEA
PAAGDAPAADDAKKALIAAALARAKAQKDTVEVRNTDNLSPAVQAEIAAVEARRKAALETGAAPVATPDNES
>Mature_552_residues
MIGRLFSFRGGIKPAAHKEESAGAAIVAAPLPAQLVVPLRQSIRATARCLVAPGQRVLKGERIGAADGPLGTAVHAPTSG
TVVEIAPRPMAHPSGLDTRCVIIAPDGEDRWIEHQPFDHRAAGRDATLAHLRDCGIVGLGGATFPSHVKLGRGKGVETLI
LNGAECEPWITCDDRLMRERAADILAGATVLRELIGAQRLIVGIEDNKPEAIAAMRAAAGSDAEVVAVPALYPAGGEKQL
IRVLTGIEIPYGKLGGDFGVQCFNVGTAHAVYRAIAHGEPLVSRVVTLTGSVARPGNYEVAIGTPIQDLLPLAQPAGDTD
RYLMGGPMMGFALPRLDVPVVKATNCVIAASPALFPPPPPEQPCIRCGECARACPAELQPFELYWFGRARNFGKAQEYHL
FDCIECGCCAYVCPAHIPLVDYFRFSKGEIWARERDKDAADAARERFEFRNFRQEREKAEKAARLAAKAAETRSKLAEEA
PAAGDAPAADDAKKALIAAALARAKAQKDTVEVRNTDNLSPAVQAEIAAVEARRKAALETGAAPVATPDNES

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=476, Percent_Identity=47.0588235294118, Blast_Score=421, Evalue=1e-119,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 58596; Mature: 58596

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGRLFSFRGGIKPAAHKEESAGAAIVAAPLPAQLVVPLRQSIRATARCLVAPGQRVLKG
CCCCCCHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCC
ERIGAADGPLGTAVHAPTSGTVVEIAPRPMAHPSGLDTRCVIIAPDGEDRWIEHQPFDHR
CCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
AAGRDATLAHLRDCGIVGLGGATFPSHVKLGRGKGVETLILNGAECEPWITCDDRLMRER
CCCCCHHHHHHHCCCEEECCCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHH
AADILAGATVLRELIGAQRLIVGIEDNKPEAIAAMRAAAGSDAEVVAVPALYPAGGEKQL
HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHH
IRVLTGIEIPYGKLGGDFGVQCFNVGTAHAVYRAIAHGEPLVSRVVTLTGSVARPGNYEV
HHHHHCCCCCCHHCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEE
AIGTPIQDLLPLAQPAGDTDRYLMGGPMMGFALPRLDVPVVKATNCVIAASPALFPPPPP
EECCCHHHHHHHCCCCCCCCCEEECCCHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCC
EQPCIRCGECARACPAELQPFELYWFGRARNFGKAQEYHLFDCIECGCCAYVCPAHIPLV
CCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCHH
DYFRFSKGEIWARERDKDAADAARERFEFRNFRQEREKAEKAARLAAKAAETRSKLAEEA
HHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAAGDAPAADDAKKALIAAALARAKAQKDTVEVRNTDNLSPAVQAEIAAVEARRKAALET
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
GAAPVATPDNES
CCCCCCCCCCCC
>Mature Secondary Structure
MIGRLFSFRGGIKPAAHKEESAGAAIVAAPLPAQLVVPLRQSIRATARCLVAPGQRVLKG
CCCCCCHHCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCC
ERIGAADGPLGTAVHAPTSGTVVEIAPRPMAHPSGLDTRCVIIAPDGEDRWIEHQPFDHR
CCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC
AAGRDATLAHLRDCGIVGLGGATFPSHVKLGRGKGVETLILNGAECEPWITCDDRLMRER
CCCCCHHHHHHHCCCEEECCCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHH
AADILAGATVLRELIGAQRLIVGIEDNKPEAIAAMRAAAGSDAEVVAVPALYPAGGEKQL
HHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHH
IRVLTGIEIPYGKLGGDFGVQCFNVGTAHAVYRAIAHGEPLVSRVVTLTGSVARPGNYEV
HHHHHCCCCCCHHCCCCCCCEEEECCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEE
AIGTPIQDLLPLAQPAGDTDRYLMGGPMMGFALPRLDVPVVKATNCVIAASPALFPPPPP
EECCCHHHHHHHCCCCCCCCCEEECCCHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCC
EQPCIRCGECARACPAELQPFELYWFGRARNFGKAQEYHLFDCIECGCCAYVCPAHIPLV
CCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCHHHHHCCCCCCHH
DYFRFSKGEIWARERDKDAADAARERFEFRNFRQEREKAEKAARLAAKAAETRSKLAEEA
HHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PAAGDAPAADDAKKALIAAALARAKAQKDTVEVRNTDNLSPAVQAEIAAVEARRKAALET
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
GAAPVATPDNES
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]