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The map label for this gene is hoxY [H]

Identifier: 119897705

GI number: 119897705

Start: 1545987

End: 1546559

Strand: Direct

Name: hoxY [H]

Synonym: azo1414

Alternate gene names: 119897705

Gene position: 1545987-1546559 (Clockwise)

Preceding gene: 119897704

Following gene: 119897706

Centisome position: 35.33

GC content: 68.59

Gene sequence:

>573_bases
ATGACCGAGCCGTCCGCGCAGGAGAAGCGGCCCGAACCGGCCCGCTTGCGCATCGCCACCGCGTCGCTGGCGGGCTGCTT
CGGCTGCCACATGTCGCTGCTCGACATCGACGAGCGGATCTTCGAACTGGCGGCCAAGGTCGAGTTCGACCGCTCCCCGC
TCACCGACATCAAGCACTGCGGCCCGTGCGACATCGGCCTGATCGAAGGCGGCGTGTGCAATGCCGAAAACGTCCATGTG
CTGCGCGAGTTCCGCCGCAACTGCAAGACGCTGGTGGCGGTGGGCGCGTGCGCGATCAACGGCGGGCTGCCGGCGCAGCG
CAACCACCTCGACGTGGGCGCCTGCCTGCAGGAGGTGTATTGCTACCGCGAGGGGCTGGACGGCGCCGGCGTGCCGGACG
ACCCCGAACTGCCGCTGCTGCTGGACAAGGTGAGGCCGATCCACGAAGTCGTGCGGGTCGACTACTTCCTGCCGGGCTGC
CCGCCCTCGGGCGATGCGATCTGGAAATTCCTGTCCGACCTCGTGGCCGGCCGCACCCCGCGGCTGCCCTACGCATTGAT
GCATTTCGACTGA

Upstream 100 bases:

>100_bases
TCGGCGTGATCCTCAAGAAGCGCGTCGGGTTCGCGGTGCCGATCGGCGAACGGACCTACGACGCCGAGCCGATCCACGTG
CATGCCATGGAGCGCGACAC

Downstream 100 bases:

>100_bases
GCCGGCGATGAGCGAACACCTTCAACCGACAGTGCAGCAGGACGGCCTGCGCCGGGTCGCGATCGACCCGGTGTCGCGCG
TGGAAGGCCATGGCAAGGTC

Product: hydrogen dehydrogenase subunit delta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MTEPSAQEKRPEPARLRIATASLAGCFGCHMSLLDIDERIFELAAKVEFDRSPLTDIKHCGPCDIGLIEGGVCNAENVHV
LREFRRNCKTLVAVGACAINGGLPAQRNHLDVGACLQEVYCYREGLDGAGVPDDPELPLLLDKVRPIHEVVRVDYFLPGC
PPSGDAIWKFLSDLVAGRTPRLPYALMHFD

Sequences:

>Translated_190_residues
MTEPSAQEKRPEPARLRIATASLAGCFGCHMSLLDIDERIFELAAKVEFDRSPLTDIKHCGPCDIGLIEGGVCNAENVHV
LREFRRNCKTLVAVGACAINGGLPAQRNHLDVGACLQEVYCYREGLDGAGVPDDPELPLLLDKVRPIHEVVRVDYFLPGC
PPSGDAIWKFLSDLVAGRTPRLPYALMHFD
>Mature_189_residues
TEPSAQEKRPEPARLRIATASLAGCFGCHMSLLDIDERIFELAAKVEFDRSPLTDIKHCGPCDIGLIEGGVCNAENVHVL
REFRRNCKTLVAVGACAINGGLPAQRNHLDVGACLQEVYCYREGLDGAGVPDDPELPLLLDKVRPIHEVVRVDYFLPGCP
PSGDAIWKFLSDLVAGRTPRLPYALMHFD

Specific function: Unknown

COG id: COG1941

COG function: function code C; Coenzyme F420-reducing hydrogenase, gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006137 [H]

Pfam domain/function: PF01058 Oxidored_q6 [H]

EC number: =1.12.1.2 [H]

Molecular weight: Translated: 20837; Mature: 20706

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPSAQEKRPEPARLRIATASLAGCFGCHMSLLDIDERIFELAAKVEFDRSPLTDIKHC
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
GPCDIGLIEGGVCNAENVHVLREFRRNCKTLVAVGACAINGGLPAQRNHLDVGACLQEVY
CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
CYREGLDGAGVPDDPELPLLLDKVRPIHEVVRVDYFLPGCPPSGDAIWKFLSDLVAGRTP
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
RLPYALMHFD
CCCEEEEECC
>Mature Secondary Structure 
TEPSAQEKRPEPARLRIATASLAGCFGCHMSLLDIDERIFELAAKVEFDRSPLTDIKHC
CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC
GPCDIGLIEGGVCNAENVHVLREFRRNCKTLVAVGACAINGGLPAQRNHLDVGACLQEVY
CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
CYREGLDGAGVPDDPELPLLLDKVRPIHEVVRVDYFLPGCPPSGDAIWKFLSDLVAGRTP
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
RLPYALMHFD
CCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2188945; 12948488; 2496982 [H]