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The map label for this gene is xylS3 [H]

Identifier: 119897409

GI number: 119897409

Start: 1206325

End: 1207365

Strand: Direct

Name: xylS3 [H]

Synonym: azo1118

Alternate gene names: 119897409

Gene position: 1206325-1207365 (Clockwise)

Preceding gene: 119897402

Following gene: 119897410

Centisome position: 27.57

GC content: 68.88

Gene sequence:

>1041_bases
ATGCATCCTTCGGCGAACCTGGACCTGTCCAAGGTCTATCGCAACTGCGTGTTCCAGTCCCGCTCGGCGGTGACTTCACA
TGCCCAGCTCAGCCGGGAGCTCTCGGAGCACGATCTGGAATGGCGGCGCGGCAGCGTCGATACCGCGCTGTTCCGCGCCG
ACGTCAATCGCATGAGCCTGCTGGCGCTGCGCTACGGTGCCGAGGTAGAGGTGCGGCCCGAACCGTTCAAGGACTTCGCG
CTGGTGCAGATGCCCCTTCGTGGTGCGGCGGAGATCGAATGCGACGGGGTGCGGCTCACGGTGGCGCAGGGCGAAGCCGC
GGTGGTGGCGCCGCGCCGGCAGATCCGTCTGGTGTGGCAGCCCGGCTGCGAGCAGTTGCTGCTGAAGGTGCCGTTCGAGC
TGCTGCGACAGGTGTCCTGCCATACCTGTATACGTAGCCGCTGCCCGGACGACGCGAGTGATTGCGGCGTCGGCCTGGAA
CCTGCCTTCGTGATCGAGCGCGGGTTCAACCTGCAGTGGCGCGCGCTGGTGCAGCAACTGCTGAACCTGCTGCCCGCGCC
GGGCGAAGCCGGCCTGCACCCCGGCTGGCTCAACCAGTTCGAGCAGACGGTGGCGTTGTTCCTGCTCGCGCATCAGCCTG
CTGCCGTCGGGCGCGACCTGGACGACGACGCGGGGCCGGCCGAGGCGGTGATCGAGTTGACGGCATCGTCGCGGCTGGCC
GAGCGCAAGCTGGACGCGGTGGAGGACTACATGCGCAGCCGGCTGTTCGCGCCGATTTCGCTCGCCGACCTCGCCAAGGC
GGCCGGCGTCAGTGCGCGCACGCTCAACATCCTGTGTCACCGCTACCGTGGCGTGGCGCCAATGGTGCTGCTGCGGCATG
TAAGGCTGGATGCGGCGCGCGCGCGCCTGCTGGCCGACCCCTTCGCCAGCGTCACCGAGGTCGCGCTCGAATACGGCTTC
GGTCATCTCGGCCGCTTCTCCGCCTACTACCGCGAACGCTTCGGCGAACTGCCGCGCGACACCGGCGCGGCGCGCCACTG
A

Upstream 100 bases:

>100_bases
GGTATAGAAGTGTAAGTTTTACTTATAAATAAATAAGCGCACCTTTTCGCCTCGCGGTAGAACCCCCGCGCGGAAAGGGC
GTAGCCACAGAGAGGCGCAC

Downstream 100 bases:

>100_bases
GCCGGGCCTGGAACACCGCCCCGCGCGCTGCCGAAAGCGGATAGCAGCACTGCGGGTTTCGGCTAGCGCGGGTGGTGGCG
CGGCGGCACGCTGGGGCCAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MHPSANLDLSKVYRNCVFQSRSAVTSHAQLSRELSEHDLEWRRGSVDTALFRADVNRMSLLALRYGAEVEVRPEPFKDFA
LVQMPLRGAAEIECDGVRLTVAQGEAAVVAPRRQIRLVWQPGCEQLLLKVPFELLRQVSCHTCIRSRCPDDASDCGVGLE
PAFVIERGFNLQWRALVQQLLNLLPAPGEAGLHPGWLNQFEQTVALFLLAHQPAAVGRDLDDDAGPAEAVIELTASSRLA
ERKLDAVEDYMRSRLFAPISLADLAKAAGVSARTLNILCHRYRGVAPMVLLRHVRLDAARARLLADPFASVTEVALEYGF
GHLGRFSAYYRERFGELPRDTGAARH

Sequences:

>Translated_346_residues
MHPSANLDLSKVYRNCVFQSRSAVTSHAQLSRELSEHDLEWRRGSVDTALFRADVNRMSLLALRYGAEVEVRPEPFKDFA
LVQMPLRGAAEIECDGVRLTVAQGEAAVVAPRRQIRLVWQPGCEQLLLKVPFELLRQVSCHTCIRSRCPDDASDCGVGLE
PAFVIERGFNLQWRALVQQLLNLLPAPGEAGLHPGWLNQFEQTVALFLLAHQPAAVGRDLDDDAGPAEAVIELTASSRLA
ERKLDAVEDYMRSRLFAPISLADLAKAAGVSARTLNILCHRYRGVAPMVLLRHVRLDAARARLLADPFASVTEVALEYGF
GHLGRFSAYYRERFGELPRDTGAARH
>Mature_346_residues
MHPSANLDLSKVYRNCVFQSRSAVTSHAQLSRELSEHDLEWRRGSVDTALFRADVNRMSLLALRYGAEVEVRPEPFKDFA
LVQMPLRGAAEIECDGVRLTVAQGEAAVVAPRRQIRLVWQPGCEQLLLKVPFELLRQVSCHTCIRSRCPDDASDCGVGLE
PAFVIERGFNLQWRALVQQLLNLLPAPGEAGLHPGWLNQFEQTVALFLLAHQPAAVGRDLDDDAGPAEAVIELTASSRLA
ERKLDAVEDYMRSRLFAPISLADLAKAAGVSARTLNILCHRYRGVAPMVLLRHVRLDAARARLLADPFASVTEVALEYGF
GHLGRFSAYYRERFGELPRDTGAARH

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788778, Length=143, Percent_Identity=33.5664335664336, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38427; Mature: 38427

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS00356 HTH_LACI_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPSANLDLSKVYRNCVFQSRSAVTSHAQLSRELSEHDLEWRRGSVDTALFRADVNRMSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LALRYGAEVEVRPEPFKDFALVQMPLRGAAEIECDGVRLTVAQGEAAVVAPRRQIRLVWQ
HHHHCCCEEEECCCCCCCHHHHEECCCCCCEEEECCEEEEEECCCEEEECCCHHEEEEEC
PGCEQLLLKVPFELLRQVSCHTCIRSRCPDDASDCGVGLEPAFVIERGFNLQWRALVQQL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHCCCCCHHHHHHHHH
LNLLPAPGEAGLHPGWLNQFEQTVALFLLAHQPAAVGRDLDDDAGPAEAVIELTASSRLA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH
ERKLDAVEDYMRSRLFAPISLADLAKAAGVSARTLNILCHRYRGVAPMVLLRHVRLDAAR
HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ARLLADPFASVTEVALEYGFGHLGRFSAYYRERFGELPRDTGAARH
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MHPSANLDLSKVYRNCVFQSRSAVTSHAQLSRELSEHDLEWRRGSVDTALFRADVNRMSL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LALRYGAEVEVRPEPFKDFALVQMPLRGAAEIECDGVRLTVAQGEAAVVAPRRQIRLVWQ
HHHHCCCEEEECCCCCCCHHHHEECCCCCCEEEECCEEEEEECCCEEEECCCHHEEEEEC
PGCEQLLLKVPFELLRQVSCHTCIRSRCPDDASDCGVGLEPAFVIERGFNLQWRALVQQL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHHHHCCCCCHHHHHHHHH
LNLLPAPGEAGLHPGWLNQFEQTVALFLLAHQPAAVGRDLDDDAGPAEAVIELTASSRLA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHH
ERKLDAVEDYMRSRLFAPISLADLAKAAGVSARTLNILCHRYRGVAPMVLLRHVRLDAAR
HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
ARLLADPFASVTEVALEYGFGHLGRFSAYYRERFGELPRDTGAARH
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]