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The map label for this gene is kdsD [H]

Identifier: 119897085

GI number: 119897085

Start: 850880

End: 851875

Strand: Reverse

Name: kdsD [H]

Synonym: azo0794

Alternate gene names: 119897085

Gene position: 851875-850880 (Counterclockwise)

Preceding gene: 119897087

Following gene: 119897084

Centisome position: 19.47

GC content: 71.49

Gene sequence:

>996_bases
ATGGACCCAATCGCGCCGGGCACTGCGCCCACTCACCGTGCCGCCGAACTCGCCCGCCACGTGCTGCGCGTCGAAGCTGC
GGCCGTCGCCGCGCTCGCCGAGCGTGTGGGCGACGACTTTGAACGTGCCGTCGAGCTGATCCTCGGCCGTAGCGGTCGCG
TCATCGTGACCGGCATCGGCAAGTCGGGCCACATTGCCCGCAAGCTCGCCGCCACGCTCGCCAGCACCGGAACCCCCGCC
TATTTCGTGCACGCGGCCGAGGCTGCGCATGGTGACCTCGGCATGATCACCCCGGAGGACGTGGTGATCGCGCTGTCGAA
TTCCGGGGCAAGCGAAGAACTGCTGATGATCGTGCCGCTCGTGAAGCGCCAGGGCGCGCGTCTGATCGCGCTCACGGGGC
GGCCTGATTCGCCGCTCGCGCGCGAGGCGGACGTGCATCTGGACGGGGCGGTCAGCGAGGAGGCCTGTCCGCTCAATCTC
GCCCCGACCGCGAGCACCACTGCGGCGCTCGCGCTCGGGGACGCGCTCGCCGTGGCCCTGCTCGACGCCCGTGGCTTCGG
TCCGGACGACTTTGCCCGCTCGCACCCGGGCGGCTCGCTGGGCCGCCGCCTTCTCACCCACGTCAGCGACGTCATGCGGC
CCGCACCGGAAGTCCCGGTGGTGGGGCGCGAGGCCGCGCTCGCCGAAGCGCTGCTGGCGATGACGCGGGGGGGCATGGGG
ATGACGGTCGTCGCCGATCCCGACGGCCGCCCGCTCGGCATCTTCACCGACGGCGACCTGCGCCGCGCGCTCGAGAAAGG
CATTGACGTGCGCGCCGCACGGATCGCGGACCTCATGACCCCGCAGCCGCGCCACATCTCGCCTGATGCCCTCGCGGCGG
AGGCGGCCGAAGTGATGGAACGCCAGCGCATCAGCCAGTTGCTGGTGCTCGATGCCGCGGGCAAGCTGGCCGGCGCACTC
ACCACCCACGACCTGATGCTCGCGAAGGTAATCTGA

Upstream 100 bases:

>100_bases
GCGGAGACGGCGCAGCGCCGGACGTGGCCGCGCCGGTGACCGGTGCTCTACCCGAACGGCGTCTGCCGCGTTTTTCCACC
AGTGTAACCGCTTCGCCAGC

Downstream 100 bases:

>100_bases
TGGCCCAGCCGGAATCCGCCGCAAAAATCCGCCTGATGGGGTTCGATGTCGACGGTGTCCTCACCGACGGCAGCCTGTAC
TTCACCCCCAACGGCGAAGA

Product: sugar-phosphate isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MDPIAPGTAPTHRAAELARHVLRVEAAAVAALAERVGDDFERAVELILGRSGRVIVTGIGKSGHIARKLAATLASTGTPA
YFVHAAEAAHGDLGMITPEDVVIALSNSGASEELLMIVPLVKRQGARLIALTGRPDSPLAREADVHLDGAVSEEACPLNL
APTASTTAALALGDALAVALLDARGFGPDDFARSHPGGSLGRRLLTHVSDVMRPAPEVPVVGREAALAEALLAMTRGGMG
MTVVADPDGRPLGIFTDGDLRRALEKGIDVRAARIADLMTPQPRHISPDALAAEAAEVMERQRISQLLVLDAAGKLAGAL
TTHDLMLAKVI

Sequences:

>Translated_331_residues
MDPIAPGTAPTHRAAELARHVLRVEAAAVAALAERVGDDFERAVELILGRSGRVIVTGIGKSGHIARKLAATLASTGTPA
YFVHAAEAAHGDLGMITPEDVVIALSNSGASEELLMIVPLVKRQGARLIALTGRPDSPLAREADVHLDGAVSEEACPLNL
APTASTTAALALGDALAVALLDARGFGPDDFARSHPGGSLGRRLLTHVSDVMRPAPEVPVVGREAALAEALLAMTRGGMG
MTVVADPDGRPLGIFTDGDLRRALEKGIDVRAARIADLMTPQPRHISPDALAAEAAEVMERQRISQLLVLDAAGKLAGAL
TTHDLMLAKVI
>Mature_331_residues
MDPIAPGTAPTHRAAELARHVLRVEAAAVAALAERVGDDFERAVELILGRSGRVIVTGIGKSGHIARKLAATLASTGTPA
YFVHAAEAAHGDLGMITPEDVVIALSNSGASEELLMIVPLVKRQGARLIALTGRPDSPLAREADVHLDGAVSEEACPLNL
APTASTTAALALGDALAVALLDARGFGPDDFARSHPGGSLGRRLLTHVSDVMRPAPEVPVVGREAALAEALLAMTRGGMG
MTVVADPDGRPLGIFTDGDLRRALEKGIDVRAARIADLMTPQPRHISPDALAAEAAEVMERQRISQLLVLDAAGKLAGAL
TTHDLMLAKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=322, Percent_Identity=52.1739130434783, Blast_Score=328, Evalue=3e-91,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=46.3258785942492, Blast_Score=272, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34288; Mature: 34288

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPIAPGTAPTHRAAELARHVLRVEAAAVAALAERVGDDFERAVELILGRSGRVIVTGIG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEECC
KSGHIARKLAATLASTGTPAYFVHAAEAAHGDLGMITPEDVVIALSNSGASEELLMIVPL
CCCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEH
VKRQGARLIALTGRPDSPLAREADVHLDGAVSEEACPLNLAPTASTTAALALGDALAVAL
HHCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LDARGFGPDDFARSHPGGSLGRRLLTHVSDVMRPAPEVPVVGREAALAEALLAMTRGGMG
HHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
MTVVADPDGRPLGIFTDGDLRRALEKGIDVRAARIADLMTPQPRHISPDALAAEAAEVME
EEEEECCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
RQRISQLLVLDAAGKLAGALTTHDLMLAKVI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDPIAPGTAPTHRAAELARHVLRVEAAAVAALAERVGDDFERAVELILGRSGRVIVTGIG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEECC
KSGHIARKLAATLASTGTPAYFVHAAEAAHGDLGMITPEDVVIALSNSGASEELLMIVPL
CCCHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEH
VKRQGARLIALTGRPDSPLAREADVHLDGAVSEEACPLNLAPTASTTAALALGDALAVAL
HHCCCCEEEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LDARGFGPDDFARSHPGGSLGRRLLTHVSDVMRPAPEVPVVGREAALAEALLAMTRGGMG
HHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC
MTVVADPDGRPLGIFTDGDLRRALEKGIDVRAARIADLMTPQPRHISPDALAAEAAEVME
EEEEECCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
RQRISQLLVLDAAGKLAGALTTHDLMLAKVI
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]